Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RPL5P22-201ENST00000480199 884 ntBASIC7.38□□□□□ -1.23
SHANK3Q9BYB0 AC068587.1-201ENST00000483613 781 ntBASIC7.38□□□□□ -1.23
SHANK3Q9BYB0 AC072052.1-201ENST00000496556 306 ntBASIC7.38□□□□□ -1.23
SHANK3Q9BYB0 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC7.38□□□□□ -1.23
SHANK3Q9BYB0 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC7.38□□□□□ -1.23
SHANK3Q9BYB0 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC7.38□□□□□ -1.23
SHANK3Q9BYB0 AL392048.1-201ENST00000613946 534 ntBASIC7.38□□□□□ -1.23
SHANK3Q9BYB0 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC7.38□□□□□ -1.23
SHANK3Q9BYB0 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 ITPK1-AS1-201ENST00000553639 4701 ntBASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 MFSD8-216ENST00000641147 4009 ntBASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 TEP1-201ENST00000262715 10695 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 C4BPAP2-201ENST00000428434 478 ntBASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 AL161722.1-201ENST00000446972 1032 ntBASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 AL603882.1-201ENST00000463059 681 ntBASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 RN7SL385P-201ENST00000468873 276 ntBASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 RN7SL459P-201ENST00000481078 302 ntBASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 AC091193.1-201ENST00000604640 448 ntBASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 CYP4F35P-202ENST00000636121 390 ntBASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 AC092821.2-201ENST00000545710 2042 ntBASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC7.37□□□□□ -1.23
SHANK3Q9BYB0 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 RN7SKP104-201ENST00000362605 328 ntBASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 RNVU1-6-201ENST00000364688 164 ntBASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 DUTP5-201ENST00000406790 469 ntBASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 RPL23AP18-201ENST00000416139 468 ntBASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 AL731534.1-201ENST00000434711 269 ntBASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 LDHAP2-201ENST00000437325 985 ntBASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 DPPA3P2-202ENST00000557188 1219 ntBASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 CASC22-201ENST00000569713 386 ntTSL 5 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 AC109583.2-201ENST00000617367 129 ntBASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 AC090527.3-201ENST00000619041 548 ntBASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC7.36□□□□□ -1.23
SHANK3Q9BYB0 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 AC007568.1-201ENST00000422912 471 ntBASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 CEACAMP7-201ENST00000444105 496 ntBASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 DUTP1-201ENST00000493631 470 ntBASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 ABCA11P-202ENST00000504019 2110 ntBASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 PCDH19-203ENST00000420881 7936 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHANK3Q9BYB0 AP003119.3-201ENST00000566747 4192 ntBASIC7.35□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms