Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 PARP4P2-201ENST00000446672 3326 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AL121835.1-201ENST00000404250 354 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 PTCD2P2-201ENST00000415579 1095 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC016027.5-201ENST00000427227 210 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 AL353662.1-201ENST00000439099 327 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 PFN2-209ENST00000481275 560 ntTSL 4 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC008945.1-201ENST00000505144 499 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 CYP4F27P-201ENST00000514557 494 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 Vault.2-201ENST00000516519 98 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AL845552.1-201ENST00000556820 323 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 OOSP1P2-201ENST00000579644 351 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AL645933.2-201ENST00000606743 1207 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 AL022394.1-201ENST00000606979 292 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC096861.1-201ENST00000616652 240 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 FAM27E2-201ENST00000619668 403 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 AL591926.1-201ENST00000620542 217 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC009950.2-201ENST00000636548 183 ntBASIC5.33□□□□□ -1.56
SKA3Q8IX90 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SKA3Q8IX90 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.33□□□□□ -1.56
SKA3Q8IX90 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 KYNUP3-201ENST00000574386 1341 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 AL031595.2-201ENST00000624215 19071 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 RNU1-65P-201ENST00000363919 148 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 RPL12P12-201ENST00000424633 501 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 FTLP8-201ENST00000446770 267 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC068491.1-201ENST00000449539 1241 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC122718.2-201ENST00000505325 591 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 RN7SKP35-201ENST00000517210 151 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC020937.1-201ENST00000519677 1013 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC004890.3-201ENST00000605566 1095 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC091167.5-201ENST00000605689 894 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC241377.1-201ENST00000619797 406 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 HSPD1P9-201ENST00000420325 1636 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 HCFC2P1-201ENST00000392864 1592 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms