Protein–RNA interactions for Protein: P09630

HOXC6, Homeobox protein Hox-C6, humanhuman

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6P09630 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC6P09630 RNU4-34P-201ENST00000410431 124 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 RN7SKP29-201ENST00000410957 272 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 DPPA2P3-201ENST00000411853 655 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 SMC4P1-201ENST00000414479 527 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC6.72□□□□□ -1.33
HOXC6P09630 RPS4XP5-201ENST00000419038 768 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC6.72□□□□□ -1.33
HOXC6P09630 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC6.72□□□□□ -1.33
HOXC6P09630 AL157385.1-201ENST00000446973 268 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 RPL7L1P3-201ENST00000455249 689 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 AC093166.4-201ENST00000457867 318 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 RN7SL165P-201ENST00000477476 291 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 AC022215.1-201ENST00000481770 362 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 RN7SL727P-201ENST00000482164 296 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 AC099521.1-201ENST00000482557 334 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 RPL23AP40-201ENST00000487630 390 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 CYP4F27P-201ENST00000514557 494 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 AL049872.1-201ENST00000556323 322 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC6.72□□□□□ -1.33
HOXC6P09630 AC233699.1-201ENST00000569955 1168 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 MIR1269B-201ENST00000580405 75 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 GMFG-212ENST00000602185 423 ntTSL 3 BASIC6.72□□□□□ -1.33
HOXC6P09630 AL034374.2-201ENST00000605281 548 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC6.72□□□□□ -1.33
HOXC6P09630 AC007204.2-201ENST00000615022 616 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC6P09630 AC089998.1-201ENST00000548575 3141 ntBASIC6.72□□□□□ -1.33
HOXC6P09630 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC6P09630 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC6P09630 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC6P09630 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC6P09630 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.72□□□□□ -1.33
HOXC6P09630 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.72□□□□□ -1.33
HOXC6P09630 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC6P09630 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC6P09630 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC6P09630 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.33
HOXC6P09630 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
HOXC6P09630 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC6.71□□□□□ -1.33
HOXC6P09630 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC6.71□□□□□ -1.33
HOXC6P09630 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
HOXC6P09630 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.33
HOXC6P09630 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
HOXC6P09630 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HOXC6P09630 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.71□□□□□ -1.34
HOXC6P09630 U3.7-201ENST00000363668 216 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 RN7SKP166-201ENST00000410812 305 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 AL353626.3-201ENST00000413399 657 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 TNPO1P1-201ENST00000423641 1138 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 CFL1P1-202ENST00000432948 411 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 HMGB3P24-201ENST00000433260 622 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC6.71□□□□□ -1.34
HOXC6P09630 AC103563.5-201ENST00000455643 364 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 RN7SL352P-201ENST00000466002 277 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 PFN1P6-201ENST00000476786 399 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 AC231760.1-201ENST00000498002 260 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HOXC6P09630 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC6.71□□□□□ -1.34
HOXC6P09630 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HOXC6P09630 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC6.71□□□□□ -1.34
HOXC6P09630 HMGB1P42-201ENST00000532126 553 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC6.71□□□□□ -1.34
HOXC6P09630 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC6.71□□□□□ -1.34
HOXC6P09630 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.71□□□□□ -1.34
HOXC6P09630 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC6.71□□□□□ -1.34
HOXC6P09630 MIR4301-201ENST00000577203 66 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC6.71□□□□□ -1.34
HOXC6P09630 AC092944.2-201ENST00000605443 889 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 AL021368.3-201ENST00000607119 578 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.71□□□□□ -1.34
HOXC6P09630 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC6.71□□□□□ -1.34
HOXC6P09630 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HOXC6P09630 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC6.71□□□□□ -1.34
HOXC6P09630 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HOXC6P09630 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
HOXC6P09630 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
HOXC6P09630 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HOXC6P09630 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
HOXC6P09630 AL162456.1-201ENST00000634535 2006 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 AL590763.1-201ENST00000398297 1545 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 AC104162.1-201ENST00000430831 2382 ntBASIC6.71□□□□□ -1.34
HOXC6P09630 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
HOXC6P09630 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC6P09630 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.7□□□□□ -1.34
HOXC6P09630 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC6P09630 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC6P09630 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.7□□□□□ -1.34
HOXC6P09630 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
HOXC6P09630 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.7□□□□□ -1.34
HOXC6P09630 AC022034.1-201ENST00000512867 2156 ntBASIC6.7□□□□□ -1.34
HOXC6P09630 RNU1-19P-201ENST00000363306 165 ntBASIC6.7□□□□□ -1.34
HOXC6P09630 RNU6-171P-201ENST00000384354 107 ntBASIC6.7□□□□□ -1.34
HOXC6P09630 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.7□□□□□ -1.34
HOXC6P09630 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.7□□□□□ -1.34
HOXC6P09630 AC099677.3-201ENST00000427081 395 ntBASIC6.7□□□□□ -1.34
HOXC6P09630 NANOGP4-201ENST00000427230 913 ntBASIC6.7□□□□□ -1.34
HOXC6P09630 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC6.7□□□□□ -1.34
HOXC6P09630 GAPDHP58-201ENST00000438477 1006 ntBASIC6.7□□□□□ -1.34
HOXC6P09630 AC005297.1-201ENST00000444765 862 ntBASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms