Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.61□□□□□ -1.35
COPB1P53618 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COPB1P53618 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COPB1P53618 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COPB1P53618 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
COPB1P53618 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
COPB1P53618 MTCO1P22-201ENST00000604619 1360 ntBASIC6.6□□□□□ -1.35
COPB1P53618 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
COPB1P53618 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC6.6□□□□□ -1.35
COPB1P53618 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 MT-RNR1-201ENST00000389680 954 ntBASIC6.6□□□□□ -1.35
COPB1P53618 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
COPB1P53618 SNORA11.3-201ENST00000408471 128 ntBASIC6.6□□□□□ -1.35
COPB1P53618 AL096829.1-201ENST00000413677 457 ntBASIC6.6□□□□□ -1.35
COPB1P53618 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.6□□□□□ -1.35
COPB1P53618 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.6□□□□□ -1.35
COPB1P53618 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.6□□□□□ -1.35
COPB1P53618 AL138899.2-201ENST00000439139 499 ntBASIC6.6□□□□□ -1.35
COPB1P53618 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.6□□□□□ -1.35
COPB1P53618 AC098818.1-201ENST00000478593 252 ntBASIC6.6□□□□□ -1.35
COPB1P53618 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.6□□□□□ -1.35
COPB1P53618 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC6.6□□□□□ -1.35
COPB1P53618 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC6.6□□□□□ -1.35
COPB1P53618 AC095052.1-201ENST00000509955 863 ntBASIC6.6□□□□□ -1.35
COPB1P53618 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC6.6□□□□□ -1.35
COPB1P53618 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC6.6□□□□□ -1.35
COPB1P53618 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC6.6□□□□□ -1.35
COPB1P53618 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC6.6□□□□□ -1.35
COPB1P53618 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.6□□□□□ -1.35
COPB1P53618 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.6□□□□□ -1.35
COPB1P53618 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC6.6□□□□□ -1.35
COPB1P53618 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC6.6□□□□□ -1.35
COPB1P53618 AP001823.1-201ENST00000604056 1003 ntBASIC6.6□□□□□ -1.35
COPB1P53618 AC092944.2-201ENST00000605443 889 ntBASIC6.6□□□□□ -1.35
COPB1P53618 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC6.6□□□□□ -1.35
COPB1P53618 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.6□□□□□ -1.35
COPB1P53618 SNORA11.6-201ENST00000619030 128 ntBASIC6.6□□□□□ -1.35
COPB1P53618 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC6.6□□□□□ -1.35
COPB1P53618 SNX18P12-201ENST00000624821 759 ntBASIC6.6□□□□□ -1.35
COPB1P53618 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC6.6□□□□□ -1.35
COPB1P53618 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COPB1P53618 AC130304.1-201ENST00000622942 2385 ntBASIC6.6□□□□□ -1.35
COPB1P53618 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
COPB1P53618 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.6□□□□□ -1.35
COPB1P53618 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.59□□□□□ -1.35
COPB1P53618 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
COPB1P53618 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 OR10R3P-201ENST00000361688 942 ntBASIC6.59□□□□□ -1.35
COPB1P53618 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC6.59□□□□□ -1.35
COPB1P53618 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC6.59□□□□□ -1.35
COPB1P53618 RN7SKP144-201ENST00000411108 279 ntBASIC6.59□□□□□ -1.35
COPB1P53618 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.59□□□□□ -1.35
COPB1P53618 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.59□□□□□ -1.35
COPB1P53618 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.59□□□□□ -1.35
COPB1P53618 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC6.59□□□□□ -1.35
COPB1P53618 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 AC092601.1-201ENST00000444526 383 ntBASIC6.59□□□□□ -1.35
COPB1P53618 ZNF619P1-201ENST00000446539 752 ntBASIC6.59□□□□□ -1.35
COPB1P53618 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.59□□□□□ -1.35
COPB1P53618 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC6.59□□□□□ -1.35
COPB1P53618 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.59□□□□□ -1.35
COPB1P53618 IGKV1OR22-1-201ENST00000521497 360 ntBASIC6.59□□□□□ -1.35
COPB1P53618 AC025423.2-201ENST00000537570 439 ntBASIC6.59□□□□□ -1.35
COPB1P53618 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.59□□□□□ -1.35
COPB1P53618 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.59□□□□□ -1.35
COPB1P53618 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC6.59□□□□□ -1.35
COPB1P53618 AC011500.1-201ENST00000601963 469 ntBASIC6.59□□□□□ -1.35
COPB1P53618 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC6.59□□□□□ -1.35
COPB1P53618 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.59□□□□□ -1.35
COPB1P53618 AC089999.3-201ENST00000622440 577 ntBASIC6.59□□□□□ -1.35
COPB1P53618 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COPB1P53618 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.59□□□□□ -1.35
COPB1P53618 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.59□□□□□ -1.36
COPB1P53618 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COPB1P53618 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COPB1P53618 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COPB1P53618 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.59□□□□□ -1.36
COPB1P53618 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.59□□□□□ -1.36
COPB1P53618 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms