Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC6.19□□□□□ -1.42
COL4A4P53420 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.19□□□□□ -1.42
COL4A4P53420 AC090424.1-201ENST00000535243 736 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 AL049872.1-201ENST00000556323 322 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 GARSP1-201ENST00000570895 719 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC6.19□□□□□ -1.42
COL4A4P53420 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC6.19□□□□□ -1.42
COL4A4P53420 ELOCP28-201ENST00000590044 317 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 AL139099.4-201ENST00000614802 114 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 AC100827.5-201ENST00000615883 426 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 OR52B5P-202ENST00000641118 1110 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
COL4A4P53420 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
COL4A4P53420 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
COL4A4P53420 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC6.19□□□□□ -1.42
COL4A4P53420 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.18□□□□□ -1.42
COL4A4P53420 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 AC083899.1-201ENST00000454465 3819 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
COL4A4P53420 RPL23P2-201ENST00000320371 421 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC6.18□□□□□ -1.42
COL4A4P53420 RPS26P38-201ENST00000414476 348 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 AL807761.1-201ENST00000417622 171 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 AC108075.1-201ENST00000424692 529 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 PRUNEP1-201ENST00000425846 705 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC6.18□□□□□ -1.42
COL4A4P53420 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC6.18□□□□□ -1.42
COL4A4P53420 RPS11P7-201ENST00000442125 465 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 EIF4EBP2P1-201ENST00000450009 343 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 HIGD1AP8-201ENST00000453927 274 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC6.18□□□□□ -1.42
COL4A4P53420 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC6.18□□□□□ -1.42
COL4A4P53420 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC6.18□□□□□ -1.42
COL4A4P53420 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.18□□□□□ -1.42
COL4A4P53420 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC6.18□□□□□ -1.42
COL4A4P53420 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC6.18□□□□□ -1.42
COL4A4P53420 RBM22P12-201ENST00000567098 1255 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC6.18□□□□□ -1.42
COL4A4P53420 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC6.18□□□□□ -1.42
COL4A4P53420 AL118522.2-201ENST00000616045 615 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC6.18□□□□□ -1.42
COL4A4P53420 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC6.18□□□□□ -1.42
COL4A4P53420 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
COL4A4P53420 THAP12P9-201ENST00000503971 2360 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
COL4A4P53420 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.18□□□□□ -1.42
COL4A4P53420 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 AL161912.4-201ENST00000623889 2468 ntBASIC6.18□□□□□ -1.42
COL4A4P53420 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL4A4P53420 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
COL4A4P53420 AC140479.2-201ENST00000421567 3130 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC6.17□□□□□ -1.42
COL4A4P53420 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC6.17□□□□□ -1.42
COL4A4P53420 USP24P1-201ENST00000433802 779 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC6.17□□□□□ -1.42
COL4A4P53420 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC6.17□□□□□ -1.42
COL4A4P53420 TRBV5-2-201ENST00000489095 273 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 AC073610.1-201ENST00000489971 396 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 AC009120.1-201ENST00000493458 473 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC6.17□□□□□ -1.42
COL4A4P53420 OR4A42P-201ENST00000531397 938 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC6.17□□□□□ -1.42
COL4A4P53420 OR1F2P-201ENST00000570470 933 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 GTF2IP4-201ENST00000453092 2054 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
COL4A4P53420 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 AL451142.1-201ENST00000375867 775 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 RNA5SP339-201ENST00000390987 122 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 AL139128.1-201ENST00000413921 941 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 PSMD10P3-201ENST00000437000 448 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 AL450023.1-201ENST00000450868 751 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 AC093890.1-201ENST00000502554 540 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
COL4A4P53420 HSPE1P2-201ENST00000554777 306 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 OR11J2P-201ENST00000555298 907 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
COL4A4P53420 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 149.2 ms