Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL592494.2-201ENST00000425455 1548 ntBASIC5.18□□□□□ -1.58
HOXA1P49639 PCAT14-202ENST00000627127 3935 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 USP46-202ENST00000451218 4622 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA1P49639 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
HOXA1P49639 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA1P49639 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
HOXA1P49639 SNORA27.3-201ENST00000364937 134 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 RNA5SP355-201ENST00000365317 135 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 LDHAP5-201ENST00000394996 622 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 S100B-203ENST00000397648 839 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 CCNB2P1-201ENST00000399411 1150 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 SNORA11D-201ENST00000408548 128 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 SNORA11E-201ENST00000408778 128 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 RN7SKP117-201ENST00000410175 264 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 U3.43-201ENST00000410734 213 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 MEG8-201ENST00000414488 800 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC079809.1-201ENST00000415468 276 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA1P49639 ARAFP1-201ENST00000422172 605 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 MTND4LP14-201ENST00000429447 288 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 OR13K1P-201ENST00000444577 975 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA1P49639 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA1P49639 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC5.17□□□□□ -1.58
HOXA1P49639 MTND2P30-201ENST00000456663 382 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 RPL5P15-201ENST00000475870 897 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 RPL21P42-201ENST00000488408 464 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 AC069304.1-201ENST00000491593 704 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC106760.2-201ENST00000504159 619 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC010374.2-201ENST00000512933 535 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 RN7SKP157-201ENST00000516174 282 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC005000.1-201ENST00000536192 288 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 AC007068.2-201ENST00000543168 395 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 DCN-215ENST00000550099 719 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC010547.7-201ENST00000570323 333 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC5.17□□□□□ -1.58
HOXA1P49639 AL355802.4-201ENST00000607635 548 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 AC084824.5-201ENST00000612009 413 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 GAPDHP41-201ENST00000613707 975 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 AL356752.1-201ENST00000615844 593 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HOXA1P49639 MIR7854-201ENST00000620068 65 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA1P49639 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.17□□□□□ -1.58
HOXA1P49639 AC099654.6-201ENST00000636487 512 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA1P49639 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA1P49639 AP001029.2-203ENST00000589795 4910 ntBASIC5.17□□□□□ -1.58
HOXA1P49639 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA1P49639 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
HOXA1P49639 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA1P49639 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.17□□□□□ -1.58
HOXA1P49639 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA1P49639 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA1P49639 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA1P49639 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA1P49639 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
HOXA1P49639 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
HOXA1P49639 AC016583.1-201ENST00000624221 2431 ntBASIC5.16□□□□□ -1.58
HOXA1P49639 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA1P49639 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA1P49639 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HOXA1P49639 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA1P49639 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXA1P49639 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA1P49639 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA1P49639 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA1P49639 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms