Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RPL23AP18-201ENST00000416139 468 ntBASIC7.44□□□□□ -1.22
COL18A1P39060 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC7.44□□□□□ -1.22
COL18A1P39060 FTH1P2-201ENST00000466086 412 ntBASIC7.44□□□□□ -1.22
COL18A1P39060 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC7.44□□□□□ -1.22
COL18A1P39060 IGHVIII-76-1-201ENST00000523776 286 ntBASIC7.44□□□□□ -1.22
COL18A1P39060 OR5AZ1P-201ENST00000527448 943 ntBASIC7.44□□□□□ -1.22
COL18A1P39060 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
COL18A1P39060 AC006116.3-201ENST00000592968 361 ntBASIC7.44□□□□□ -1.22
COL18A1P39060 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC7.44□□□□□ -1.22
COL18A1P39060 CDC42EP3P1-201ENST00000601004 764 ntBASIC7.44□□□□□ -1.22
COL18A1P39060 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC7.44□□□□□ -1.22
COL18A1P39060 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC7.44□□□□□ -1.22
COL18A1P39060 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 F5-202ENST00000367797 7024 ntAPPRIS P2 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC7.44□□□□□ -1.22
COL18A1P39060 AL662795.2-201ENST00000624252 3706 ntBASIC7.44□□□□□ -1.22
COL18A1P39060 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 AC022893.2-201ENST00000564832 3296 ntBASIC7.44□□□□□ -1.22
COL18A1P39060 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 ZNF101P1-201ENST00000435701 1720 ntBASIC7.44□□□□□ -1.22
COL18A1P39060 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC7.44□□□□□ -1.22
COL18A1P39060 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 HSPA8P18-201ENST00000439846 1928 ntBASIC7.44□□□□□ -1.22
COL18A1P39060 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC7.44□□□□□ -1.22
COL18A1P39060 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 AL133325.1-201ENST00000421090 382 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 AC105399.1-202ENST00000447303 205 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 RPS23P9-201ENST00000448848 438 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 CBX1P2-201ENST00000453841 458 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC7.43□□□□□ -1.22
COL18A1P39060 SNRPCP2-201ENST00000504370 475 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 RNA5SP228-201ENST00000516232 133 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 RN7SKP66-201ENST00000516681 231 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 AP001922.4-201ENST00000526967 290 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC7.43□□□□□ -1.22
COL18A1P39060 MIR4646-201ENST00000580775 63 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC7.43□□□□□ -1.22
COL18A1P39060 PACRG-210ENST00000611387 279 ntTSL 5 BASIC7.43□□□□□ -1.22
COL18A1P39060 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
COL18A1P39060 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
COL18A1P39060 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC7.43□□□□□ -1.22
COL18A1P39060 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC7.43□□□□□ -1.22
COL18A1P39060 PARN-201ENST00000341484 2100 ntTSL 2 BASIC7.43□□□□□ -1.22
COL18A1P39060 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC7.43□□□□□ -1.22
COL18A1P39060 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
COL18A1P39060 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
COL18A1P39060 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 RPL37P18-201ENST00000411602 243 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 AC090114.3-201ENST00000479267 829 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 CSNK1A1P3-201ENST00000504105 330 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC7.43□□□□□ -1.22
COL18A1P39060 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC7.43□□□□□ -1.22
COL18A1P39060 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC7.43□□□□□ -1.22
COL18A1P39060 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC7.43□□□□□ -1.22
COL18A1P39060 AP002799.1-201ENST00000623552 423 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 AP002991.2-201ENST00000623807 2801 ntBASIC7.43□□□□□ -1.22
COL18A1P39060 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
COL18A1P39060 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL18A1P39060 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC7.43□□□□□ -1.22
COL18A1P39060 PWAR1-201ENST00000624188 2414 ntBASIC7.42□□□□□ -1.22
COL18A1P39060 AC104581.5-201ENST00000624171 7141 ntBASIC7.42□□□□□ -1.22
COL18A1P39060 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL18A1P39060 PARP14-202ENST00000474629 7915 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL18A1P39060 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC7.42□□□□□ -1.22
COL18A1P39060 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL18A1P39060 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC7.42□□□□□ -1.22
COL18A1P39060 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
COL18A1P39060 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC7.42□□□□□ -1.22
COL18A1P39060 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC7.42□□□□□ -1.22
COL18A1P39060 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC7.42□□□□□ -1.22
COL18A1P39060 CT45A11P-201ENST00000448043 1134 ntBASIC7.42□□□□□ -1.22
COL18A1P39060 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC7.42□□□□□ -1.22
COL18A1P39060 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC7.42□□□□□ -1.22
COL18A1P39060 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC7.42□□□□□ -1.22
COL18A1P39060 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC7.42□□□□□ -1.22
COL18A1P39060 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC7.42□□□□□ -1.22
COL18A1P39060 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC7.42□□□□□ -1.22
COL18A1P39060 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
COL18A1P39060 PPP1R12B-204ENST00000391959 15431 ntTSL 5 BASIC7.42□□□□□ -1.22
COL18A1P39060 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC7.42□□□□□ -1.22
COL18A1P39060 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
COL18A1P39060 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL18A1P39060 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC7.42□□□□□ -1.22
COL18A1P39060 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL18A1P39060 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms