Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.97□□□□□ -1.29
BRCA1P38398 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC6.97□□□□□ -1.29
BRCA1P38398 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC6.97□□□□□ -1.29
BRCA1P38398 AC078878.1-201ENST00000539832 958 ntBASIC6.97□□□□□ -1.29
BRCA1P38398 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.97□□□□□ -1.29
BRCA1P38398 AL355974.3-201ENST00000617383 467 ntBASIC6.97□□□□□ -1.29
BRCA1P38398 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
BRCA1P38398 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 AC114947.2-201ENST00000565748 2125 ntBASIC6.97□□□□□ -1.29
BRCA1P38398 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
BRCA1P38398 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC6.97□□□□□ -1.29
BRCA1P38398 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC6.96□□□□□ -1.29
BRCA1P38398 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC6.96□□□□□ -1.29
BRCA1P38398 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC6.96□□□□□ -1.29
BRCA1P38398 SNORA16A-201ENST00000384342 137 ntBASIC6.96□□□□□ -1.29
BRCA1P38398 RN7SL51P-201ENST00000468230 285 ntBASIC6.96□□□□□ -1.29
BRCA1P38398 AC006463.2-201ENST00000473326 348 ntBASIC6.96□□□□□ -1.29
BRCA1P38398 RPS18P6-201ENST00000476880 458 ntBASIC6.96□□□□□ -1.29
BRCA1P38398 RN7SL165P-201ENST00000477476 291 ntBASIC6.96□□□□□ -1.29
BRCA1P38398 STRADBP1-201ENST00000478954 1281 ntBASIC6.96□□□□□ -1.29
BRCA1P38398 RPL23AP40-201ENST00000487630 390 ntBASIC6.96□□□□□ -1.29
BRCA1P38398 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC6.96□□□□□ -1.29
BRCA1P38398 AC007494.1-201ENST00000562293 760 ntBASIC6.96□□□□□ -1.29
BRCA1P38398 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
BRCA1P38398 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.96□□□□□ -1.29
BRCA1P38398 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC6.96□□□□□ -1.29
BRCA1P38398 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.29
BRCA1P38398 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.29
BRCA1P38398 MFSD8-219ENST00000641228 2559 ntBASIC6.96□□□□□ -1.29
BRCA1P38398 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
BRCA1P38398 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
BRCA1P38398 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
BRCA1P38398 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.96□□□□□ -1.29
BRCA1P38398 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
BRCA1P38398 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC6.96□□□□□ -1.3
BRCA1P38398 OR9K1P-202ENST00000641111 3217 ntBASIC6.96□□□□□ -1.3
BRCA1P38398 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.96□□□□□ -1.3
BRCA1P38398 AP004289.1-201ENST00000436307 2205 ntBASIC6.96□□□□□ -1.3
BRCA1P38398 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
BRCA1P38398 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
BRCA1P38398 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.96□□□□□ -1.3
BRCA1P38398 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC6.96□□□□□ -1.3
BRCA1P38398 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
BRCA1P38398 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC6.96□□□□□ -1.3
BRCA1P38398 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
BRCA1P38398 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.96□□□□□ -1.3
BRCA1P38398 NIFKP3-201ENST00000417799 865 ntBASIC6.96□□□□□ -1.3
BRCA1P38398 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
BRCA1P38398 AL162739.1-201ENST00000450606 307 ntBASIC6.96□□□□□ -1.3
BRCA1P38398 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC6.96□□□□□ -1.3
BRCA1P38398 IGKV1OR22-5-201ENST00000458718 354 ntBASIC6.96□□□□□ -1.3
BRCA1P38398 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC6.96□□□□□ -1.3
BRCA1P38398 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC6.96□□□□□ -1.3
BRCA1P38398 AC087283.1-201ENST00000604029 1074 ntBASIC6.96□□□□□ -1.3
BRCA1P38398 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC6.96□□□□□ -1.3
BRCA1P38398 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
BRCA1P38398 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC6.95□□□□□ -1.3
BRCA1P38398 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
BRCA1P38398 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC6.95□□□□□ -1.3
BRCA1P38398 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
BRCA1P38398 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
BRCA1P38398 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.95□□□□□ -1.3
BRCA1P38398 ERG-205ENST00000398910 4954 ntTSL 5 BASIC6.95□□□□□ -1.3
BRCA1P38398 ZNF101P1-201ENST00000435701 1720 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
BRCA1P38398 HLF-210ENST00000575345 3589 ntTSL 2 BASIC6.95□□□□□ -1.3
BRCA1P38398 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.95□□□□□ -1.3
BRCA1P38398 RNU6ATAC7P-201ENST00000408111 127 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 AC015977.1-201ENST00000418887 292 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 AC006466.1-201ENST00000438721 289 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 TPT1P12-201ENST00000448968 492 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC6.95□□□□□ -1.3
BRCA1P38398 RPL5P22-201ENST00000480199 884 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.95□□□□□ -1.3
BRCA1P38398 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
BRCA1P38398 PRELID3BP5-201ENST00000508612 460 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 KCTD9P4-201ENST00000526766 1166 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 BRD9P1-201ENST00000529855 560 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 AC024940.3-201ENST00000538551 316 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.95□□□□□ -1.3
BRCA1P38398 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.95□□□□□ -1.3
BRCA1P38398 AC127381.1-201ENST00000555979 939 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC6.95□□□□□ -1.3
BRCA1P38398 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC6.95□□□□□ -1.3
BRCA1P38398 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC6.95□□□□□ -1.3
BRCA1P38398 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
BRCA1P38398 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
BRCA1P38398 AC022905.1-201ENST00000503430 3048 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 AC104162.1-201ENST00000430831 2382 ntBASIC6.95□□□□□ -1.3
BRCA1P38398 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms