Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL133173.1-201ENST00000423458 397 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC7.7□□□□□ -1.18
HOXC9P31274 AC016027.5-201ENST00000427227 210 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC7.7□□□□□ -1.18
HOXC9P31274 HCG14-201ENST00000444986 413 ntTSL 2 BASIC7.7□□□□□ -1.18
HOXC9P31274 AL450996.1-201ENST00000445574 1202 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 CT45A11P-201ENST00000448043 1134 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 SBDSP1-204ENST00000453858 737 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 AC100832.1-201ENST00000471945 383 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 AC096754.1-201ENST00000508904 818 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC7.7□□□□□ -1.18
HOXC9P31274 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC7.7□□□□□ -1.18
HOXC9P31274 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC7.7□□□□□ -1.18
HOXC9P31274 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC7.7□□□□□ -1.18
HOXC9P31274 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC7.7□□□□□ -1.18
HOXC9P31274 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC7.7□□□□□ -1.18
HOXC9P31274 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC7.7□□□□□ -1.18
HOXC9P31274 AC015720.2-201ENST00000567709 334 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC7.7□□□□□ -1.18
HOXC9P31274 AC137695.1-201ENST00000604126 489 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 MIR8080-201ENST00000622224 89 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC7.7□□□□□ -1.18
HOXC9P31274 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC7.7□□□□□ -1.18
HOXC9P31274 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
HOXC9P31274 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
HOXC9P31274 CD86-204ENST00000469710 1604 ntTSL 2 BASIC7.7□□□□□ -1.18
HOXC9P31274 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
HOXC9P31274 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
HOXC9P31274 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
HOXC9P31274 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
HOXC9P31274 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
HOXC9P31274 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.69□□□□□ -1.18
HOXC9P31274 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
HOXC9P31274 PABPC1P6-201ENST00000445594 1829 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 C4BPAP1-201ENST00000415474 1893 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 OR52B5P-204ENST00000641744 3467 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC7.69□□□□□ -1.18
HOXC9P31274 RNA5SP30-201ENST00000365552 115 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 AC008171.1-201ENST00000395058 200 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 SPTLC1P2-201ENST00000407089 121 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 AC116036.1-201ENST00000412199 367 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 NIFKP3-201ENST00000417799 865 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC7.69□□□□□ -1.18
HOXC9P31274 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC7.69□□□□□ -1.18
HOXC9P31274 LDHBP2-201ENST00000456969 1005 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC7.69□□□□□ -1.18
HOXC9P31274 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC7.69□□□□□ -1.18
HOXC9P31274 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC7.69□□□□□ -1.18
HOXC9P31274 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC7.69□□□□□ -1.18
HOXC9P31274 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC7.69□□□□□ -1.18
HOXC9P31274 SUGT1P3-202ENST00000604259 383 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 CYCSP1-201ENST00000604815 315 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 AC010245.2-201ENST00000606908 1167 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 AC005840.5-201ENST00000619166 599 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 AC020763.5-201ENST00000623298 430 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 AC010480.1-201ENST00000624823 684 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC7.69□□□□□ -1.18
HOXC9P31274 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
HOXC9P31274 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
HOXC9P31274 FBXL21-201ENST00000297158 1305 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
HOXC9P31274 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
HOXC9P31274 AC078880.4-201ENST00000617627 1749 ntBASIC7.69□□□□□ -1.18
HOXC9P31274 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
HOXC9P31274 DPY19L1P1-201ENST00000417811 2594 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
HOXC9P31274 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC7.68□□□□□ -1.18
HOXC9P31274 CYP4Z2P-201ENST00000423332 1512 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
HOXC9P31274 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
HOXC9P31274 LCOR-201ENST00000286067 4542 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC7.68□□□□□ -1.18
HOXC9P31274 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC7.68□□□□□ -1.18
HOXC9P31274 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC7.68□□□□□ -1.18
HOXC9P31274 MIR1286-201ENST00000408112 78 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 RPL35AP24-201ENST00000413846 330 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC7.68□□□□□ -1.18
HOXC9P31274 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC7.68□□□□□ -1.18
HOXC9P31274 AC019185.1-201ENST00000442718 389 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC7.68□□□□□ -1.18
HOXC9P31274 AP000547.1-201ENST00000454360 617 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 EIF1P7-201ENST00000487533 337 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC7.68□□□□□ -1.18
HOXC9P31274 RN7SKP98-201ENST00000517070 156 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC7.68□□□□□ -1.18
HOXC9P31274 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC7.68□□□□□ -1.18
HOXC9P31274 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC7.68□□□□□ -1.18
HOXC9P31274 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
HOXC9P31274 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC7.68□□□□□ -1.18
HOXC9P31274 AC005034.3-201ENST00000604845 1747 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
HOXC9P31274 SALL4P7-201ENST00000555779 3120 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC7.68□□□□□ -1.18
HOXC9P31274 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
HOXC9P31274 RAD17P2-201ENST00000451754 1977 ntBASIC7.68□□□□□ -1.18
HOXC9P31274 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
HOXC9P31274 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
HOXC9P31274 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
HOXC9P31274 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
HOXC9P31274 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC7.67□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms