Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HIF3AQ9Y2N7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 AC005332.7-201ENST00000614046 2005 ntBASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.77■□□□□ 0.44
HIF3AQ9Y2N7 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HIF3AQ9Y2N7 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.77■□□□□ 0.43
HIF3AQ9Y2N7 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.77■□□□□ 0.43
HIF3AQ9Y2N7 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HIF3AQ9Y2N7 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HIF3AQ9Y2N7 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HIF3AQ9Y2N7 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
HIF3AQ9Y2N7 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
HIF3AQ9Y2N7 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 AL121832.2-201ENST00000610979 668 ntBASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HIF3AQ9Y2N7 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 MIPEPP3-201ENST00000412105 444 ntBASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 AC073210.2-201ENST00000430369 194 ntBASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
HIF3AQ9Y2N7 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms