Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 AC110285.5-201ENST00000611501 352 ntBASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 AC099778.1-201ENST00000568593 1911 ntBASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM39Q9HCM9 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 NBPF21P-201ENST00000425093 1451 ntBASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM39Q9HCM9 AL691432.2-201ENST00000607222 2038 ntBASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM39Q9HCM9 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.71
TRIM39Q9HCM9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRIM39Q9HCM9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
TRIM39Q9HCM9 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRIM39Q9HCM9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRIM39Q9HCM9 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
TRIM39Q9HCM9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
TRIM39Q9HCM9 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms