Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUCKS1Q9H1E3 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 AC010980.2-201ENST00000587099 1412 ntBASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.34■■□□□ 1.01
NUCKS1Q9H1E3 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 C2orf69P4-201ENST00000565394 541 ntBASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 AC142086.2-201ENST00000569753 217 ntBASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NUCKS1Q9H1E3 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NUCKS1Q9H1E3 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
NUCKS1Q9H1E3 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
NUCKS1Q9H1E3 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.33■■□□□ 1
NUCKS1Q9H1E3 AC098818.2-201ENST00000564925 2320 ntBASIC21.33■■□□□ 1
NUCKS1Q9H1E3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NUCKS1Q9H1E3 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NUCKS1Q9H1E3 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NUCKS1Q9H1E3 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 MIPEPP3-201ENST00000412105 444 ntBASIC21.31■■□□□ 1
NUCKS1Q9H1E3 AC098934.4-201ENST00000564127 592 ntBASIC21.31■■□□□ 1
NUCKS1Q9H1E3 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 AP000974.1-201ENST00000623909 2387 ntBASIC21.31■■□□□ 1
NUCKS1Q9H1E3 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms