Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 AC091874.3-201ENST00000512672 1195 ntBASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.44■□□□□ 0.7
TRIM54Q9BYV2 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 GUSBP6-202ENST00000438529 1198 ntBASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 AL109923.1-201ENST00000618799 583 ntBASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.43■□□□□ 0.7
TRIM54Q9BYV2 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 AP001271.2-201ENST00000624018 1556 ntBASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 AC090192.1-201ENST00000517740 490 ntBASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM54Q9BYV2 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 AC009237.14-201ENST00000609975 1594 ntBASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM54Q9BYV2 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 BX323043.1-201ENST00000641006 1765 ntBASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms