Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 AC098818.2-201ENST00000564925 2320 ntBASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 AC008694.1-202ENST00000636953 945 ntBASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 AC073111.5-205ENST00000641717 521 ntBASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM56Q9BRZ2 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 AC080038.1-201ENST00000611274 1154 ntBASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 OR10C1-204ENST00000622521 1039 ntBASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM56Q9BRZ2 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 CDCA4P2-201ENST00000441182 718 ntBASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM56Q9BRZ2 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 ID1-201ENST00000376105 1233 ntBASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 AC005332.7-201ENST00000614046 2005 ntBASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM56Q9BRZ2 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 KRT8P20-201ENST00000423953 1409 ntBASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 C2orf69P4-201ENST00000565394 541 ntBASIC20.02■□□□□ 0.8
TRIM56Q9BRZ2 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms