Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 AL356652.1-201ENST00000615962 565 ntBASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC22.64■■□□□ 1.22
SH3RF1Q7Z6J0 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.22
SH3RF1Q7Z6J0 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SH3RF1Q7Z6J0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
SH3RF1Q7Z6J0 H19-201ENST00000411754 1788 ntTSL 5 BASIC22.64■■□□□ 1.22
SH3RF1Q7Z6J0 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
SH3RF1Q7Z6J0 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.21
SH3RF1Q7Z6J0 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC22.64■■□□□ 1.21
SH3RF1Q7Z6J0 AC005829.2-201ENST00000571422 1056 ntBASIC22.64■■□□□ 1.21
SH3RF1Q7Z6J0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SH3RF1Q7Z6J0 AC026471.5-201ENST00000615068 467 ntBASIC22.64■■□□□ 1.21
SH3RF1Q7Z6J0 CABP2-204ENST00000636477 941 ntTSL 5 BASIC22.64■■□□□ 1.21
SH3RF1Q7Z6J0 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC22.64■■□□□ 1.21
SH3RF1Q7Z6J0 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SH3RF1Q7Z6J0 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SH3RF1Q7Z6J0 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
SH3RF1Q7Z6J0 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 AP003071.4-201ENST00000562276 1284 ntBASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC22.63■■□□□ 1.21
SH3RF1Q7Z6J0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC22.62■■□□□ 1.21
SH3RF1Q7Z6J0 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 AL049597.2-201ENST00000565575 961 ntBASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 AC125437.2-201ENST00000625180 2167 ntBASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 BX119927.1-201ENST00000636596 1552 ntBASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC22.61■■□□□ 1.21
SH3RF1Q7Z6J0 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 MMP23A-201ENST00000234610 1017 ntBASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 SAPCD2P4-201ENST00000424595 1171 ntBASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 GRAP-204ENST00000573099 846 ntTSL 3 BASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
SH3RF1Q7Z6J0 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms