Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LHX1P48742 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.93■□□□□ 0.94
LHX1P48742 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.93■□□□□ 0.94
LHX1P48742 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LHX1P48742 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LHX1P48742 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LHX1P48742 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LHX1P48742 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LHX1P48742 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.93■□□□□ 0.94
LHX1P48742 AC009237.14-201ENST00000609975 1594 ntBASIC20.93■□□□□ 0.94
LHX1P48742 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.92■□□□□ 0.94
LHX1P48742 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
LHX1P48742 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
LHX1P48742 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
LHX1P48742 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
LHX1P48742 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.92■□□□□ 0.94
LHX1P48742 SNORA78-201ENST00000459373 127 ntBASIC20.92■□□□□ 0.94
LHX1P48742 AP002982.1-201ENST00000492365 877 ntBASIC20.92■□□□□ 0.94
LHX1P48742 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.92■□□□□ 0.94
LHX1P48742 AC073195.1-201ENST00000607241 877 ntBASIC20.92■□□□□ 0.94
LHX1P48742 AC113410.3-201ENST00000623366 203 ntBASIC20.92■□□□□ 0.94
LHX1P48742 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.92■□□□□ 0.94
LHX1P48742 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.92■□□□□ 0.94
LHX1P48742 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.92■□□□□ 0.94
LHX1P48742 LINC01521-201ENST00000504184 1943 ntBASIC20.92■□□□□ 0.94
LHX1P48742 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.92■□□□□ 0.94
LHX1P48742 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX1P48742 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.92■□□□□ 0.94
LHX1P48742 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX1P48742 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX1P48742 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX1P48742 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX1P48742 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
LHX1P48742 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX1P48742 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX1P48742 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
LHX1P48742 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.91■□□□□ 0.94
LHX1P48742 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.91■□□□□ 0.94
LHX1P48742 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.91■□□□□ 0.94
LHX1P48742 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.91■□□□□ 0.94
LHX1P48742 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.91■□□□□ 0.94
LHX1P48742 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.91■□□□□ 0.94
LHX1P48742 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LHX1P48742 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX1P48742 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.91■□□□□ 0.94
LHX1P48742 TMEM179-206ENST00000616017 1645 ntBASIC20.91■□□□□ 0.94
LHX1P48742 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX1P48742 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX1P48742 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.9■□□□□ 0.94
LHX1P48742 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX1P48742 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
LHX1P48742 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX1P48742 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
LHX1P48742 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX1P48742 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.9■□□□□ 0.94
LHX1P48742 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.9■□□□□ 0.94
LHX1P48742 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.9■□□□□ 0.94
LHX1P48742 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.9■□□□□ 0.94
LHX1P48742 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.9■□□□□ 0.94
LHX1P48742 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX1P48742 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LHX1P48742 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
LHX1P48742 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.9■□□□□ 0.94
LHX1P48742 C1QL1P1-201ENST00000568105 661 ntBASIC20.9■□□□□ 0.94
LHX1P48742 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX1P48742 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX1P48742 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.9■□□□□ 0.94
LHX1P48742 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LHX1P48742 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX1P48742 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.9■□□□□ 0.94
LHX1P48742 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.9■□□□□ 0.94
LHX1P48742 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.9■□□□□ 0.94
LHX1P48742 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.89■□□□□ 0.94
LHX1P48742 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LHX1P48742 KRT17P2-201ENST00000300992 1314 ntBASIC20.89■□□□□ 0.93
LHX1P48742 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LHX1P48742 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LHX1P48742 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.89■□□□□ 0.93
LHX1P48742 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LHX1P48742 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LHX1P48742 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LHX1P48742 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.89■□□□□ 0.93
LHX1P48742 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.89■□□□□ 0.93
LHX1P48742 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.89■□□□□ 0.93
LHX1P48742 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.89■□□□□ 0.93
LHX1P48742 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LHX1P48742 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LHX1P48742 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LHX1P48742 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms