Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 FAM86EP-206ENST00000510506 987 ntBASIC26.21■■□□□ 1.79
COL18A1P39060 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC26.21■■□□□ 1.79
COL18A1P39060 CLN6-204ENST00000564752 900 ntTSL 3 BASIC26.21■■□□□ 1.79
COL18A1P39060 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL18A1P39060 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
COL18A1P39060 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL18A1P39060 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC26.21■■□□□ 1.79
COL18A1P39060 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL18A1P39060 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC26.2■■□□□ 1.79
COL18A1P39060 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
COL18A1P39060 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
COL18A1P39060 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC26.2■■□□□ 1.79
COL18A1P39060 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC26.2■■□□□ 1.79
COL18A1P39060 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC26.2■■□□□ 1.79
COL18A1P39060 AC008622.2-201ENST00000617006 1229 ntBASIC26.2■■□□□ 1.79
COL18A1P39060 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.79
COL18A1P39060 KRT16P6-202ENST00000425692 1426 ntBASIC26.2■■□□□ 1.79
COL18A1P39060 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
COL18A1P39060 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
COL18A1P39060 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC26.2■■□□□ 1.78
COL18A1P39060 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL18A1P39060 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC26.2■■□□□ 1.78
COL18A1P39060 SLC25A1P2-201ENST00000430693 912 ntBASIC26.2■■□□□ 1.78
COL18A1P39060 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC26.2■■□□□ 1.78
COL18A1P39060 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
COL18A1P39060 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL18A1P39060 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC26.2■■□□□ 1.78
COL18A1P39060 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL18A1P39060 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
COL18A1P39060 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL18A1P39060 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL18A1P39060 AF106564.1-201ENST00000607058 2553 ntBASIC26.19■■□□□ 1.78
COL18A1P39060 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL18A1P39060 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
COL18A1P39060 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL18A1P39060 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL18A1P39060 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC26.19■■□□□ 1.78
COL18A1P39060 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC26.19■■□□□ 1.78
COL18A1P39060 COX11P1-201ENST00000489116 835 ntBASIC26.19■■□□□ 1.78
COL18A1P39060 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC26.19■■□□□ 1.78
COL18A1P39060 AC116562.4-202ENST00000641738 218 ntBASIC26.19■■□□□ 1.78
COL18A1P39060 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC26.19■■□□□ 1.78
COL18A1P39060 BID-212ENST00000614949 1988 ntTSL 5 BASIC26.19■■□□□ 1.78
COL18A1P39060 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
COL18A1P39060 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
COL18A1P39060 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC26.18■■□□□ 1.78
COL18A1P39060 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL18A1P39060 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC26.18■■□□□ 1.78
COL18A1P39060 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC26.18■■□□□ 1.78
COL18A1P39060 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
COL18A1P39060 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL18A1P39060 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL18A1P39060 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC26.18■■□□□ 1.78
COL18A1P39060 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC26.18■■□□□ 1.78
COL18A1P39060 TSPY5P-201ENST00000426936 936 ntBASIC26.18■■□□□ 1.78
COL18A1P39060 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
COL18A1P39060 CD320-202ENST00000537716 1119 ntTSL 2 BASIC26.18■■□□□ 1.78
COL18A1P39060 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC26.18■■□□□ 1.78
COL18A1P39060 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC26.17■■□□□ 1.78
COL18A1P39060 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC26.17■■□□□ 1.78
COL18A1P39060 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL18A1P39060 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL18A1P39060 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
COL18A1P39060 AC005332.1-201ENST00000577698 1310 ntBASIC26.17■■□□□ 1.78
COL18A1P39060 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
COL18A1P39060 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC26.17■■□□□ 1.78
COL18A1P39060 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
COL18A1P39060 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC26.17■■□□□ 1.78
COL18A1P39060 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC26.17■■□□□ 1.78
COL18A1P39060 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
COL18A1P39060 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC26.17■■□□□ 1.78
COL18A1P39060 AL121956.5-201ENST00000625261 221 ntBASIC26.17■■□□□ 1.78
COL18A1P39060 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC26.17■■□□□ 1.78
COL18A1P39060 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
COL18A1P39060 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC26.17■■□□□ 1.78
COL18A1P39060 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL18A1P39060 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
COL18A1P39060 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC26.16■■□□□ 1.78
COL18A1P39060 DBP-204ENST00000599385 709 ntTSL 3 BASIC26.16■■□□□ 1.78
COL18A1P39060 KRT8P8-201ENST00000434750 1448 ntBASIC26.16■■□□□ 1.78
COL18A1P39060 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL18A1P39060 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC26.16■■□□□ 1.78
COL18A1P39060 AC007225.1-201ENST00000566331 1836 ntBASIC26.16■■□□□ 1.78
COL18A1P39060 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL18A1P39060 DERL1-203ENST00000419562 918 ntTSL 2 BASIC26.15■■□□□ 1.78
COL18A1P39060 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
COL18A1P39060 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC26.15■■□□□ 1.78
COL18A1P39060 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC26.15■■□□□ 1.78
COL18A1P39060 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC26.15■■□□□ 1.78
COL18A1P39060 GPX4-207ENST00000589115 812 ntTSL 2 BASIC26.15■■□□□ 1.78
COL18A1P39060 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC26.15■■□□□ 1.78
COL18A1P39060 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
COL18A1P39060 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
COL18A1P39060 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC26.15■■□□□ 1.78
COL18A1P39060 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
COL18A1P39060 MED25-212ENST00000618715 1467 ntTSL 5 BASIC26.15■■□□□ 1.78
COL18A1P39060 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC26.15■■□□□ 1.78
COL18A1P39060 KRT18P56-201ENST00000507275 550 ntBASIC26.15■■□□□ 1.78
COL18A1P39060 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC26.15■■□□□ 1.78
COL18A1P39060 AL441883.1-201ENST00000566170 1045 ntBASIC26.15■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms