Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC31.39■■■□□ 2.62
CLIP1P30622 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CLIP1P30622 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC31.39■■■□□ 2.62
CLIP1P30622 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC31.39■■■□□ 2.62
CLIP1P30622 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC31.39■■■□□ 2.62
CLIP1P30622 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
CLIP1P30622 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC31.39■■■□□ 2.62
CLIP1P30622 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC31.39■■■□□ 2.62
CLIP1P30622 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC31.39■■■□□ 2.62
CLIP1P30622 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC31.39■■■□□ 2.62
CLIP1P30622 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC31.39■■■□□ 2.62
CLIP1P30622 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CLIP1P30622 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
CLIP1P30622 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CLIP1P30622 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
CLIP1P30622 RCN1P1-201ENST00000400413 996 ntBASIC31.38■■■□□ 2.61
CLIP1P30622 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC31.38■■■□□ 2.61
CLIP1P30622 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
CLIP1P30622 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC31.38■■■□□ 2.61
CLIP1P30622 ABBA01031674.1-201ENST00000635145 728 ntBASIC31.38■■■□□ 2.61
CLIP1P30622 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC31.37■■■□□ 2.61
CLIP1P30622 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
CLIP1P30622 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC31.37■■■□□ 2.61
CLIP1P30622 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC31.37■■■□□ 2.61
CLIP1P30622 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC31.37■■■□□ 2.61
CLIP1P30622 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 TCF3P1-201ENST00000423021 1937 ntBASIC31.37■■■□□ 2.61
CLIP1P30622 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLIP1P30622 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC31.36■■■□□ 2.61
CLIP1P30622 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CLIP1P30622 USP39-204ENST00000409766 2033 ntTSL 2 BASIC31.36■■■□□ 2.61
CLIP1P30622 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC31.36■■■□□ 2.61
CLIP1P30622 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CLIP1P30622 AC026271.3-201ENST00000571884 352 ntBASIC31.36■■■□□ 2.61
CLIP1P30622 DECR2-212ENST00000627716 352 ntTSL 2 BASIC31.36■■■□□ 2.61
CLIP1P30622 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
CLIP1P30622 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC31.36■■■□□ 2.61
CLIP1P30622 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC31.36■■■□□ 2.61
CLIP1P30622 AC009237.14-201ENST00000609975 1594 ntBASIC31.36■■■□□ 2.61
CLIP1P30622 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CLIP1P30622 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC31.35■■■□□ 2.61
CLIP1P30622 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CLIP1P30622 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC31.35■■■□□ 2.61
CLIP1P30622 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
CLIP1P30622 HLA-A-209ENST00000638375 975 ntBASIC31.35■■■□□ 2.61
CLIP1P30622 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CLIP1P30622 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
CLIP1P30622 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC31.35■■■□□ 2.61
CLIP1P30622 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
CLIP1P30622 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CLIP1P30622 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
CLIP1P30622 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
CLIP1P30622 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC31.34■■■□□ 2.61
CLIP1P30622 MESTP1-201ENST00000404287 994 ntBASIC31.34■■■□□ 2.61
CLIP1P30622 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC31.34■■■□□ 2.61
CLIP1P30622 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC31.34■■■□□ 2.61
CLIP1P30622 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
CLIP1P30622 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC31.34■■■□□ 2.61
CLIP1P30622 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC31.34■■■□□ 2.61
CLIP1P30622 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
CLIP1P30622 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC31.33■■■□□ 2.61
CLIP1P30622 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC31.33■■■□□ 2.61
CLIP1P30622 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CLIP1P30622 RBM17P1-201ENST00000453646 1190 ntBASIC31.33■■■□□ 2.61
CLIP1P30622 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC31.33■■■□□ 2.61
CLIP1P30622 CR392000.1-201ENST00000624770 1228 ntBASIC31.33■■■□□ 2.61
CLIP1P30622 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC31.33■■■□□ 2.61
CLIP1P30622 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC31.33■■■□□ 2.61
CLIP1P30622 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CLIP1P30622 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CLIP1P30622 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
CLIP1P30622 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CLIP1P30622 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CLIP1P30622 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
CLIP1P30622 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC31.32■■■□□ 2.61
CLIP1P30622 AC004980.1-204ENST00000429707 299 ntBASIC31.32■■■□□ 2.61
CLIP1P30622 PPP1R14BP5-201ENST00000440334 435 ntBASIC31.32■■■□□ 2.61
CLIP1P30622 AL355355.2-201ENST00000442321 338 ntBASIC31.32■■■□□ 2.61
CLIP1P30622 AC116562.2-201ENST00000507042 360 ntBASIC31.32■■■□□ 2.61
CLIP1P30622 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC31.32■■■□□ 2.6
CLIP1P30622 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
CLIP1P30622 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC31.32■■■□□ 2.6
CLIP1P30622 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
CLIP1P30622 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CLIP1P30622 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CLIP1P30622 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CLIP1P30622 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CLIP1P30622 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC31.32■■■□□ 2.6
CLIP1P30622 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CLIP1P30622 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC31.32■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms