Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CD320-202ENST00000537716 1119 ntTSL 2 BASIC25.03■■□□□ 1.6
COL5A3P25940 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC25.03■■□□□ 1.6
COL5A3P25940 DBP-204ENST00000599385 709 ntTSL 3 BASIC25.03■■□□□ 1.6
COL5A3P25940 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL5A3P25940 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL5A3P25940 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL5A3P25940 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL5A3P25940 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
COL5A3P25940 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL5A3P25940 BET1L-202ENST00000332865 533 ntTSL 5 BASIC25.02■■□□□ 1.6
COL5A3P25940 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL5A3P25940 RNF152P1-201ENST00000397754 604 ntBASIC25.02■■□□□ 1.6
COL5A3P25940 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC25.02■■□□□ 1.6
COL5A3P25940 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
COL5A3P25940 SLC25A1P2-201ENST00000430693 912 ntBASIC25.02■■□□□ 1.6
COL5A3P25940 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
COL5A3P25940 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC25.02■■□□□ 1.6
COL5A3P25940 GPX4-207ENST00000589115 812 ntTSL 2 BASIC25.02■■□□□ 1.6
COL5A3P25940 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC25.02■■□□□ 1.6
COL5A3P25940 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL5A3P25940 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL5A3P25940 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL5A3P25940 AC005332.1-201ENST00000577698 1310 ntBASIC25.01■■□□□ 1.59
COL5A3P25940 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
COL5A3P25940 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC25.01■■□□□ 1.59
COL5A3P25940 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC25.01■■□□□ 1.59
COL5A3P25940 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
COL5A3P25940 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC25.01■■□□□ 1.59
COL5A3P25940 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC25.01■■□□□ 1.59
COL5A3P25940 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC25.01■■□□□ 1.59
COL5A3P25940 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC25.01■■□□□ 1.59
COL5A3P25940 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
COL5A3P25940 KRT8P8-201ENST00000434750 1448 ntBASIC25.01■■□□□ 1.59
COL5A3P25940 AF106564.1-201ENST00000607058 2553 ntBASIC25.01■■□□□ 1.59
COL5A3P25940 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC25.01■■□□□ 1.59
COL5A3P25940 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
COL5A3P25940 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC25.01■■□□□ 1.59
COL5A3P25940 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC25■■□□□ 1.59
COL5A3P25940 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
COL5A3P25940 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
COL5A3P25940 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC25■■□□□ 1.59
COL5A3P25940 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
COL5A3P25940 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC25■■□□□ 1.59
COL5A3P25940 COX11P1-201ENST00000489116 835 ntBASIC25■■□□□ 1.59
COL5A3P25940 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC25■■□□□ 1.59
COL5A3P25940 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
COL5A3P25940 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC25■■□□□ 1.59
COL5A3P25940 AC116562.4-202ENST00000641738 218 ntBASIC25■■□□□ 1.59
COL5A3P25940 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
COL5A3P25940 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
COL5A3P25940 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC25■■□□□ 1.59
COL5A3P25940 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC25■■□□□ 1.59
COL5A3P25940 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
COL5A3P25940 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC25■■□□□ 1.59
COL5A3P25940 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
COL5A3P25940 AC092338.2-201ENST00000568827 1415 ntBASIC25■■□□□ 1.59
COL5A3P25940 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC25■■□□□ 1.59
COL5A3P25940 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC25■■□□□ 1.59
COL5A3P25940 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC25■■□□□ 1.59
COL5A3P25940 AL023803.3-201ENST00000615559 522 ntBASIC25■■□□□ 1.59
COL5A3P25940 AL121956.5-201ENST00000625261 221 ntBASIC25■■□□□ 1.59
COL5A3P25940 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC25■■□□□ 1.59
COL5A3P25940 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC25■■□□□ 1.59
COL5A3P25940 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC24.99■■□□□ 1.59
COL5A3P25940 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
COL5A3P25940 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
COL5A3P25940 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
COL5A3P25940 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
COL5A3P25940 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
COL5A3P25940 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
COL5A3P25940 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
COL5A3P25940 DERL1-203ENST00000419562 918 ntTSL 2 BASIC24.99■■□□□ 1.59
COL5A3P25940 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC24.99■■□□□ 1.59
COL5A3P25940 BX664615.1-201ENST00000443558 458 ntBASIC24.99■■□□□ 1.59
COL5A3P25940 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC24.99■■□□□ 1.59
COL5A3P25940 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC24.99■■□□□ 1.59
COL5A3P25940 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
COL5A3P25940 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
COL5A3P25940 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC24.98■■□□□ 1.59
COL5A3P25940 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC24.98■■□□□ 1.59
COL5A3P25940 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC24.98■■□□□ 1.59
COL5A3P25940 FAM86EP-206ENST00000510506 987 ntBASIC24.98■■□□□ 1.59
COL5A3P25940 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
COL5A3P25940 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC24.98■■□□□ 1.59
COL5A3P25940 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC24.98■■□□□ 1.59
COL5A3P25940 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC24.98■■□□□ 1.59
COL5A3P25940 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
COL5A3P25940 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
COL5A3P25940 AC007225.1-201ENST00000566331 1836 ntBASIC24.98■■□□□ 1.59
COL5A3P25940 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
COL5A3P25940 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
COL5A3P25940 CLN6-204ENST00000564752 900 ntTSL 3 BASIC24.98■■□□□ 1.59
COL5A3P25940 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC24.98■■□□□ 1.59
COL5A3P25940 MED25-212ENST00000618715 1467 ntTSL 5 BASIC24.98■■□□□ 1.59
COL5A3P25940 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC24.97■■□□□ 1.59
COL5A3P25940 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC24.97■■□□□ 1.59
COL5A3P25940 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
COL5A3P25940 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
COL5A3P25940 BX119927.1-201ENST00000636596 1552 ntBASIC24.97■■□□□ 1.59
COL5A3P25940 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms