Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A1P20908 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A1P20908 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A1P20908 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.02■□□□□ 0.64
COL5A1P20908 AC005229.4-201ENST00000610085 2198 ntBASIC19.02■□□□□ 0.64
COL5A1P20908 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A1P20908 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
COL5A1P20908 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.02■□□□□ 0.63
COL5A1P20908 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
COL5A1P20908 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL5A1P20908 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL5A1P20908 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.02■□□□□ 0.63
COL5A1P20908 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL5A1P20908 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL5A1P20908 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.02■□□□□ 0.63
COL5A1P20908 AP000692.2-201ENST00000608391 879 ntBASIC19.02■□□□□ 0.63
COL5A1P20908 AL358472.4-201ENST00000633140 710 ntBASIC19.02■□□□□ 0.63
COL5A1P20908 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
COL5A1P20908 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.02■□□□□ 0.63
COL5A1P20908 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.02■□□□□ 0.63
COL5A1P20908 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A1P20908 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.01■□□□□ 0.63
COL5A1P20908 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.01■□□□□ 0.63
COL5A1P20908 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.01■□□□□ 0.63
COL5A1P20908 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A1P20908 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.01■□□□□ 0.63
COL5A1P20908 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A1P20908 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.01■□□□□ 0.63
COL5A1P20908 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.01■□□□□ 0.63
COL5A1P20908 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.01■□□□□ 0.63
COL5A1P20908 AC091076.1-201ENST00000610741 619 ntBASIC19.01■□□□□ 0.63
COL5A1P20908 AC010653.2-201ENST00000623505 997 ntBASIC19.01■□□□□ 0.63
COL5A1P20908 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A1P20908 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A1P20908 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A1P20908 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A1P20908 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19■□□□□ 0.63
COL5A1P20908 PHGDH-210ENST00000641115 1638 ntBASIC19■□□□□ 0.63
COL5A1P20908 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A1P20908 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A1P20908 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19■□□□□ 0.63
COL5A1P20908 AL031133.1-201ENST00000406807 723 ntBASIC19■□□□□ 0.63
COL5A1P20908 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19■□□□□ 0.63
COL5A1P20908 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19■□□□□ 0.63
COL5A1P20908 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19■□□□□ 0.63
COL5A1P20908 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A1P20908 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19■□□□□ 0.63
COL5A1P20908 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A1P20908 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19■□□□□ 0.63
COL5A1P20908 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A1P20908 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A1P20908 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A1P20908 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL5A1P20908 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL5A1P20908 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A1P20908 AC004951.3-201ENST00000418645 1148 ntBASIC19■□□□□ 0.63
COL5A1P20908 SAPCD2P2-201ENST00000431719 1174 ntBASIC19■□□□□ 0.63
COL5A1P20908 MFAP1P1-201ENST00000442257 1255 ntBASIC19■□□□□ 0.63
COL5A1P20908 CCR12P-201ENST00000446203 998 ntBASIC19■□□□□ 0.63
COL5A1P20908 GXYLT1P6-201ENST00000456472 1187 ntBASIC19■□□□□ 0.63
COL5A1P20908 NMU-205ENST00000511469 756 ntTSL 3 BASIC19■□□□□ 0.63
COL5A1P20908 AL138966.2-201ENST00000621997 464 ntBASIC19■□□□□ 0.63
COL5A1P20908 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
COL5A1P20908 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A1P20908 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL5A1P20908 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
COL5A1P20908 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A1P20908 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A1P20908 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A1P20908 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A1P20908 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A1P20908 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.99■□□□□ 0.63
COL5A1P20908 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A1P20908 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A1P20908 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A1P20908 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.99■□□□□ 0.63
COL5A1P20908 AC007663.1-201ENST00000438948 1240 ntBASIC18.99■□□□□ 0.63
COL5A1P20908 AC091390.4-202ENST00000476426 537 ntBASIC18.99■□□□□ 0.63
COL5A1P20908 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.99■□□□□ 0.63
COL5A1P20908 SLC25A1P4-201ENST00000567977 778 ntBASIC18.99■□□□□ 0.63
COL5A1P20908 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.99■□□□□ 0.63
COL5A1P20908 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.99■□□□□ 0.63
COL5A1P20908 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
COL5A1P20908 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL5A1P20908 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A1P20908 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A1P20908 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.99■□□□□ 0.63
COL5A1P20908 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A1P20908 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A1P20908 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.98■□□□□ 0.63
COL5A1P20908 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A1P20908 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A1P20908 FAM207BP-201ENST00000447172 505 ntBASIC18.98■□□□□ 0.63
COL5A1P20908 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.98■□□□□ 0.63
COL5A1P20908 AC011298.2-201ENST00000617989 482 ntBASIC18.98■□□□□ 0.63
COL5A1P20908 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.98■□□□□ 0.63
COL5A1P20908 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A1P20908 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A1P20908 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
COL5A1P20908 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms