Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGA1P17096 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGA1P17096 AP001271.2-201ENST00000624018 1556 ntBASIC20.51■□□□□ 0.87
HMGA1P17096 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGA1P17096 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGA1P17096 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGA1P17096 AC011506.1-201ENST00000474329 610 ntBASIC20.51■□□□□ 0.87
HMGA1P17096 KRT18P21-201ENST00000515767 1272 ntBASIC20.51■□□□□ 0.87
HMGA1P17096 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGA1P17096 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGA1P17096 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGA1P17096 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGA1P17096 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGA1P17096 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
HMGA1P17096 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGA1P17096 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGA1P17096 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGA1P17096 CYP2D8P-201ENST00000433633 1490 ntBASIC20.5■□□□□ 0.87
HMGA1P17096 FSCN1P1-201ENST00000568912 1481 ntBASIC20.5■□□□□ 0.87
HMGA1P17096 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGA1P17096 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGA1P17096 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGA1P17096 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGA1P17096 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGA1P17096 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGA1P17096 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGA1P17096 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGA1P17096 RCN1P1-201ENST00000400413 996 ntBASIC20.5■□□□□ 0.87
HMGA1P17096 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.5■□□□□ 0.87
HMGA1P17096 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGA1P17096 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGA1P17096 B3GAT3P1-201ENST00000471720 806 ntBASIC20.5■□□□□ 0.87
HMGA1P17096 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGA1P17096 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGA1P17096 MIR6786-201ENST00000616843 113 ntBASIC20.5■□□□□ 0.87
HMGA1P17096 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
HMGA1P17096 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGA1P17096 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGA1P17096 GABARAPL3-202ENST00000624044 1851 ntBASIC20.5■□□□□ 0.87
HMGA1P17096 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
HMGA1P17096 AL691432.2-201ENST00000607222 2038 ntBASIC20.49■□□□□ 0.87
HMGA1P17096 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGA1P17096 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
HMGA1P17096 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGA1P17096 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGA1P17096 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGA1P17096 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
HMGA1P17096 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
HMGA1P17096 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
HMGA1P17096 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGA1P17096 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
HMGA1P17096 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.49■□□□□ 0.87
HMGA1P17096 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGA1P17096 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGA1P17096 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGA1P17096 AC145285.6-201ENST00000604632 637 ntBASIC20.49■□□□□ 0.87
HMGA1P17096 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.49■□□□□ 0.87
HMGA1P17096 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGA1P17096 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGA1P17096 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
HMGA1P17096 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGA1P17096 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGA1P17096 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HMGA1P17096 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
HMGA1P17096 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGA1P17096 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGA1P17096 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGA1P17096 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGA1P17096 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.48■□□□□ 0.87
HMGA1P17096 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGA1P17096 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGA1P17096 AC131212.4-201ENST00000623606 975 ntBASIC20.48■□□□□ 0.87
HMGA1P17096 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGA1P17096 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGA1P17096 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGA1P17096 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGA1P17096 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGA1P17096 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGA1P17096 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGA1P17096 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGA1P17096 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGA1P17096 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.47■□□□□ 0.87
HMGA1P17096 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGA1P17096 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.47■□□□□ 0.87
HMGA1P17096 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
HMGA1P17096 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGA1P17096 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGA1P17096 AC010947.1-201ENST00000623454 693 ntBASIC20.47■□□□□ 0.87
HMGA1P17096 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGA1P17096 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGA1P17096 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGA1P17096 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGA1P17096 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGA1P17096 AL391422.3-201ENST00000603791 2761 ntBASIC20.47■□□□□ 0.87
HMGA1P17096 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGA1P17096 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
HMGA1P17096 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGA1P17096 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGA1P17096 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGA1P17096 KRT8P8-201ENST00000434750 1448 ntBASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms