Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CXCL1P09341 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CXCL1P09341 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CXCL1P09341 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC15.26■□□□□ 0.03
CXCL1P09341 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC15.26■□□□□ 0.03
CXCL1P09341 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CXCL1P09341 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 SERBP1P1-201ENST00000396021 1160 ntBASIC15.26■□□□□ 0.03
CXCL1P09341 SMUG1P1-201ENST00000590640 811 ntBASIC15.26■□□□□ 0.03
CXCL1P09341 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.26■□□□□ 0.03
CXCL1P09341 SYT6-210ENST00000641643 1587 ntBASIC15.26■□□□□ 0.03
CXCL1P09341 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CXCL1P09341 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CXCL1P09341 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC15.26■□□□□ 0.03
CXCL1P09341 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC15.26■□□□□ 0.03
CXCL1P09341 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CXCL1P09341 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 SNX3-202ENST00000349379 890 ntTSL 2 BASIC15.25■□□□□ 0.03
CXCL1P09341 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 AL512631.2-201ENST00000604634 923 ntBASIC15.25■□□□□ 0.03
CXCL1P09341 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC15.25■□□□□ 0.03
CXCL1P09341 RASSF1-AS1-201ENST00000629828 790 ntBASIC15.25■□□□□ 0.03
CXCL1P09341 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CXCL1P09341 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
CXCL1P09341 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.25■□□□□ 0.03
CXCL1P09341 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CXCL1P09341 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL1P09341 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL1P09341 FST-202ENST00000396947 2538 ntTSL 5 BASIC15.24■□□□□ 0.03
CXCL1P09341 WIZP1-201ENST00000531444 2299 ntBASIC15.24■□□□□ 0.03
CXCL1P09341 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC15.24■□□□□ 0.03
CXCL1P09341 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL1P09341 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL1P09341 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL1P09341 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL1P09341 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL1P09341 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL1P09341 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL1P09341 FXN-202ENST00000396364 980 ntTSL 5 BASIC15.24■□□□□ 0.03
CXCL1P09341 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL1P09341 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC15.24■□□□□ 0.03
CXCL1P09341 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC15.24■□□□□ 0.03
CXCL1P09341 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL1P09341 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL1P09341 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL1P09341 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL1P09341 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL1P09341 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL1P09341 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL1P09341 AC090340.1-201ENST00000620778 4980 ntBASIC15.24■□□□□ 0.03
CXCL1P09341 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL1P09341 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC15.24■□□□□ 0.03
CXCL1P09341 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC15.23■□□□□ 0.03
CXCL1P09341 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.23■□□□□ 0.03
CXCL1P09341 BX005040.4-201ENST00000637145 1518 ntBASIC15.23■□□□□ 0.03
CXCL1P09341 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.23■□□□□ 0.03
CXCL1P09341 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
CXCL1P09341 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC15.23■□□□□ 0.03
CXCL1P09341 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 OR2A1-AS1-204ENST00000470435 602 ntBASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms