Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.06
COL6A5A8TX70 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC15.39■□□□□ 0.05
COL6A5A8TX70 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A5A8TX70 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A5A8TX70 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A5A8TX70 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A5A8TX70 AC005104.2-201ENST00000427818 678 ntBASIC15.39■□□□□ 0.05
COL6A5A8TX70 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC15.39■□□□□ 0.05
COL6A5A8TX70 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC15.39■□□□□ 0.05
COL6A5A8TX70 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC15.39■□□□□ 0.05
COL6A5A8TX70 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A5A8TX70 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
COL6A5A8TX70 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A5A8TX70 SPDYE15P-201ENST00000424157 909 ntBASIC15.39■□□□□ 0.05
COL6A5A8TX70 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A5A8TX70 AC012615.1-201ENST00000565797 1299 ntBASIC15.39■□□□□ 0.05
COL6A5A8TX70 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.05
COL6A5A8TX70 ME2-206ENST00000638410 2289 ntTSL 5 BASIC15.39■□□□□ 0.05
COL6A5A8TX70 ME2-210ENST00000639255 2262 ntTSL 5 BASIC15.39■□□□□ 0.05
COL6A5A8TX70 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL6A5A8TX70 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
COL6A5A8TX70 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 MIR564-202ENST00000385049 94 ntBASIC15.38■□□□□ 0.05
COL6A5A8TX70 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 Telomerase-vert.1-201ENST00000363312 438 ntBASIC15.38■□□□□ 0.05
COL6A5A8TX70 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 AC112907.2-201ENST00000448639 330 ntBASIC15.38■□□□□ 0.05
COL6A5A8TX70 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 FGF14-AS2-201ENST00000606448 1074 ntBASIC15.38■□□□□ 0.05
COL6A5A8TX70 AL121672.3-201ENST00000608644 468 ntBASIC15.38■□□□□ 0.05
COL6A5A8TX70 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC15.38■□□□□ 0.05
COL6A5A8TX70 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL6A5A8TX70 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL6A5A8TX70 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL6A5A8TX70 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 HTR5BP-201ENST00000430851 1154 ntBASIC15.37■□□□□ 0.05
COL6A5A8TX70 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 MPI-205ENST00000562606 1052 ntTSL 3 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL6A5A8TX70 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL6A5A8TX70 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL6A5A8TX70 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL6A5A8TX70 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL6A5A8TX70 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL6A5A8TX70 HLA-G-203ENST00000376818 1127 ntBASIC15.37■□□□□ 0.05
COL6A5A8TX70 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 CA15P1-201ENST00000481698 905 ntBASIC15.37■□□□□ 0.05
COL6A5A8TX70 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
COL6A5A8TX70 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL6A5A8TX70 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL6A5A8TX70 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 AL035633.1-201ENST00000406139 838 ntBASIC15.36■□□□□ 0.05
COL6A5A8TX70 CHCHD2P8-201ENST00000429873 447 ntBASIC15.36■□□□□ 0.05
COL6A5A8TX70 POLD2P1-201ENST00000511220 997 ntBASIC15.36■□□□□ 0.05
COL6A5A8TX70 AL121912.1-201ENST00000603683 238 ntBASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms