Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.2■□□□□ 0.98
SMIM28A0A1B0GU29 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMIM28A0A1B0GU29 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.2■□□□□ 0.98
SMIM28A0A1B0GU29 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMIM28A0A1B0GU29 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMIM28A0A1B0GU29 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
SMIM28A0A1B0GU29 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 TMEM179-206ENST00000616017 1645 ntBASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 REXO1L12P-201ENST00000622156 912 ntBASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 AC099778.1-201ENST00000568593 1911 ntBASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMIM28A0A1B0GU29 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMIM28A0A1B0GU29 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 NUDT16P1-203ENST00000513809 620 ntBASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMIM28A0A1B0GU29 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 KRT16P1-201ENST00000399124 1418 ntBASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMIM28A0A1B0GU29 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SMIM28A0A1B0GU29 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMIM28A0A1B0GU29 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.15■□□□□ 0.98
SMIM28A0A1B0GU29 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.15■□□□□ 0.98
SMIM28A0A1B0GU29 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMIM28A0A1B0GU29 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMIM28A0A1B0GU29 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMIM28A0A1B0GU29 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMIM28A0A1B0GU29 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
SMIM28A0A1B0GU29 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SMIM28A0A1B0GU29 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms