Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 AC018553.1-201ENST00000616682 1458 ntBASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 STK25-204ENST00000405585 1643 ntTSL 2 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV40A0A0B4J280 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 LINC01023-201ENST00000606054 436 ntBASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 AL353708.3-201ENST00000610272 989 ntBASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV40A0A0B4J280 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 AC211429.1-201ENST00000415277 523 ntBASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 AC087499.1-201ENST00000418141 1075 ntBASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 NIFKP9-201ENST00000419265 221 ntBASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 YBX1P10-201ENST00000444752 975 ntBASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 CR392000.1-201ENST00000624770 1228 ntBASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 AC133561.5-201ENST00000635547 218 ntBASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.05■□□□□ 0.16
TRAV40A0A0B4J280 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 TFP1-202ENST00000475455 1573 ntBASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 NUDT16P1-203ENST00000513809 620 ntBASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms