Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 ABHD17AP1-201ENST00000358206 933 ntBASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 AC233263.1-201ENST00000578059 224 ntBASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV41A0A0B4J266 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 MTDHP1-201ENST00000605323 784 ntBASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 MMD2-204ENST00000612910 778 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
TRAV41A0A0B4J266 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV41A0A0B4J266 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC15.52■□□□□ 0.07
TRAV41A0A0B4J266 TFP1-202ENST00000475455 1573 ntBASIC15.52■□□□□ 0.07
TRAV41A0A0B4J266 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV41A0A0B4J266 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV41A0A0B4J266 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV41A0A0B4J266 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV41A0A0B4J266 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV41A0A0B4J266 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC15.52■□□□□ 0.07
TRAV41A0A0B4J266 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 AC009237.14-201ENST00000609975 1594 ntBASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 TREX2-204ENST00000370212 861 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 AC239809.2-201ENST00000415381 517 ntBASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 RN7SL471P-201ENST00000580476 299 ntBASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV41A0A0B4J266 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV41A0A0B4J266 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV41A0A0B4J266 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV41A0A0B4J266 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAV41A0A0B4J266 TMEM179-206ENST00000616017 1645 ntBASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms