Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ADAM3B-201ENST00000569937 840 ntBASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 MFSD4BP1-201ENST00000513330 1552 ntBASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 TMEM75-201ENST00000624314 2165 ntBASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 SNORA56-201ENST00000383966 129 ntBASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 METTL15P3-201ENST00000415522 1221 ntBASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 AL022331.1-201ENST00000429025 477 ntBASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 IGHV1-14-201ENST00000523391 241 ntBASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 OR4A40P-201ENST00000533878 948 ntBASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC11.27□□□□□ -0.6
SHROOM4Q9ULL8 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 LINC01616-201ENST00000561816 2280 ntBASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
SHROOM4Q9ULL8 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 AC008937.3-201ENST00000606813 1700 ntBASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 RN7SL30P-201ENST00000488416 306 ntBASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 RNU6-615P-201ENST00000516065 106 ntBASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 RN7SL708P-201ENST00000580952 299 ntBASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 AL049840.6-201ENST00000604583 345 ntBASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
SHROOM4Q9ULL8 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 RN7SKP128-201ENST00000364270 303 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 AL662874.1-201ENST00000426065 230 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 CYCSP51-201ENST00000443545 318 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 AL022237.1-201ENST00000446663 358 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 RNA5SP228-201ENST00000516232 133 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 ADH4-209ENST00000508393 2151 ntTSL 2 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 FTO-215ENST00000636491 1676 ntTSL 5 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 AC092692.1-201ENST00000623625 2595 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 TNPO1P1-201ENST00000423641 1138 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 VN1R54P-201ENST00000435210 1049 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 AC012075.1-201ENST00000436549 580 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 RPS7P3-201ENST00000443360 580 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 RPL35AP28-201ENST00000459730 331 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 RN7SL172P-201ENST00000460535 303 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 RN7SL165P-201ENST00000477476 291 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 MINCR-206ENST00000524335 499 ntTSL 2 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 OR6M2P-201ENST00000529831 871 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 AC020765.1-201ENST00000604296 328 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 MIR8080-201ENST00000622224 89 ntBASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC11.25□□□□□ -0.61
SHROOM4Q9ULL8 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms