Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
LIG3P49916 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC7.36□□□□□ -1.23
LIG3P49916 AL137058.3-201ENST00000624531 3099 ntBASIC7.36□□□□□ -1.23
LIG3P49916 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
LIG3P49916 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.23
LIG3P49916 AKAP17BP-201ENST00000431706 2719 ntBASIC7.36□□□□□ -1.23
LIG3P49916 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
LIG3P49916 TTC41P-205ENST00000551270 3963 ntBASIC7.35□□□□□ -1.23
LIG3P49916 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 FBXO3-209ENST00000531080 1448 ntTSL 2 BASIC7.35□□□□□ -1.23
LIG3P49916 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 AL049634.1-201ENST00000453770 1720 ntBASIC7.35□□□□□ -1.23
LIG3P49916 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 EEF1A1P26-201ENST00000458319 1363 ntBASIC7.35□□□□□ -1.23
LIG3P49916 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 OR4A16-201ENST00000314721 1081 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
LIG3P49916 Y_RNA.77-201ENST00000362962 107 ntBASIC7.35□□□□□ -1.23
LIG3P49916 AL451142.1-201ENST00000375867 775 ntBASIC7.35□□□□□ -1.23
LIG3P49916 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 AC090114.1-201ENST00000393266 448 ntBASIC7.35□□□□□ -1.23
LIG3P49916 ERHP2-201ENST00000402323 299 ntBASIC7.35□□□□□ -1.23
LIG3P49916 RNA5SP231-201ENST00000410496 138 ntBASIC7.35□□□□□ -1.23
LIG3P49916 Y_RNA.619-201ENST00000410951 90 ntBASIC7.35□□□□□ -1.23
LIG3P49916 RN7SKP30-201ENST00000411373 334 ntBASIC7.35□□□□□ -1.23
LIG3P49916 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 CCDC148-AS1-201ENST00000412781 795 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 AL049651.2-202ENST00000419734 412 ntTSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 TNPO1P1-201ENST00000423641 1138 ntBASIC7.35□□□□□ -1.23
LIG3P49916 LINC00266-1-202ENST00000425473 629 ntTSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC7.35□□□□□ -1.23
LIG3P49916 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC7.35□□□□□ -1.23
LIG3P49916 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 HMGB1P5-202ENST00000451497 985 ntBASIC7.35□□□□□ -1.23
LIG3P49916 MTCO2P18-201ENST00000457151 658 ntBASIC7.35□□□□□ -1.23
LIG3P49916 EIF3LP2-201ENST00000457262 807 ntBASIC7.35□□□□□ -1.23
LIG3P49916 RPS20P4-201ENST00000461659 355 ntBASIC7.35□□□□□ -1.23
LIG3P49916 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC7.35□□□□□ -1.23
LIG3P49916 AL928654.1-201ENST00000476081 354 ntBASIC7.35□□□□□ -1.23
LIG3P49916 RPL5P12-201ENST00000477071 851 ntBASIC7.35□□□□□ -1.23
LIG3P49916 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 HPRT1P2-201ENST00000505250 544 ntBASIC7.35□□□□□ -1.23
LIG3P49916 OR7E163P-201ENST00000505943 894 ntBASIC7.35□□□□□ -1.23
LIG3P49916 CHCHD2P7-201ENST00000508008 452 ntBASIC7.35□□□□□ -1.23
LIG3P49916 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 AC111194.1-201ENST00000509711 422 ntTSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 VPS37A-208ENST00000521005 479 ntTSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 IGHVII-49-1-201ENST00000521760 224 ntBASIC7.35□□□□□ -1.23
LIG3P49916 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC7.35□□□□□ -1.23
LIG3P49916 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC7.35□□□□□ -1.23
LIG3P49916 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC7.35□□□□□ -1.23
LIG3P49916 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 RN7SL689P-201ENST00000577215 297 ntBASIC7.35□□□□□ -1.23
LIG3P49916 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 RN7SL178P-201ENST00000582930 304 ntBASIC7.35□□□□□ -1.23
LIG3P49916 AC061975.3-201ENST00000583209 244 ntBASIC7.35□□□□□ -1.23
LIG3P49916 AC068802.1-201ENST00000603420 732 ntBASIC7.35□□□□□ -1.23
LIG3P49916 AC064872.1-201ENST00000604823 1072 ntBASIC7.35□□□□□ -1.23
LIG3P49916 FXYD6P1-201ENST00000604857 285 ntBASIC7.35□□□□□ -1.23
LIG3P49916 AC079248.2-201ENST00000623779 326 ntBASIC7.35□□□□□ -1.23
LIG3P49916 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC7.35□□□□□ -1.23
LIG3P49916 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC7.35□□□□□ -1.23
LIG3P49916 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
LIG3P49916 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC7.35□□□□□ -1.23
LIG3P49916 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIG3P49916 AC006116.1-201ENST00000587908 2171 ntBASIC7.35□□□□□ -1.23
LIG3P49916 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIG3P49916 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIG3P49916 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
LIG3P49916 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC7.34□□□□□ -1.23
LIG3P49916 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIG3P49916 AL512310.3-201ENST00000547023 1335 ntBASIC7.34□□□□□ -1.23
LIG3P49916 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC7.34□□□□□ -1.23
LIG3P49916 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIG3P49916 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC7.34□□□□□ -1.23
LIG3P49916 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms