Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 BMS1P13-201ENST00000417301 885 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC7.6□□□□□ -1.19
COL3A1P02461 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC7.6□□□□□ -1.19
COL3A1P02461 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC7.6□□□□□ -1.19
COL3A1P02461 AL390119.1-201ENST00000440329 312 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
COL3A1P02461 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC7.6□□□□□ -1.19
COL3A1P02461 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC7.6□□□□□ -1.19
COL3A1P02461 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC7.6□□□□□ -1.19
COL3A1P02461 USP9YP2-201ENST00000504503 1000 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 DUTP7-201ENST00000507982 486 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC7.6□□□□□ -1.19
COL3A1P02461 AC074255.1-201ENST00000511259 501 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 USP9YP1-201ENST00000513521 1002 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 TMEM97P2-201ENST00000517841 403 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 NRBF2P4-201ENST00000520874 850 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC7.6□□□□□ -1.19
COL3A1P02461 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL3A1P02461 AL512624.1-201ENST00000613638 469 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 AC025574.2-201ENST00000615621 514 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC7.6□□□□□ -1.19
COL3A1P02461 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL3A1P02461 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL3A1P02461 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC7.6□□□□□ -1.19
COL3A1P02461 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC7.6□□□□□ -1.19
COL3A1P02461 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC7.59□□□□□ -1.19
COL3A1P02461 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL3A1P02461 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL3A1P02461 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL3A1P02461 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL3A1P02461 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC7.59□□□□□ -1.19
COL3A1P02461 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL3A1P02461 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL3A1P02461 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC7.59□□□□□ -1.19
COL3A1P02461 GAPDHP24-201ENST00000328713 983 ntBASIC7.59□□□□□ -1.19
COL3A1P02461 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC7.59□□□□□ -1.19
COL3A1P02461 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC7.59□□□□□ -1.19
COL3A1P02461 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC7.59□□□□□ -1.19
COL3A1P02461 LRRC37A14P-201ENST00000452297 462 ntBASIC7.59□□□□□ -1.19
COL3A1P02461 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
COL3A1P02461 COPS8P2-201ENST00000473228 627 ntBASIC7.59□□□□□ -1.19
COL3A1P02461 RPS17P5-201ENST00000498293 408 ntBASIC7.59□□□□□ -1.19
COL3A1P02461 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC7.59□□□□□ -1.19
COL3A1P02461 MIR4311-201ENST00000580794 100 ntBASIC7.59□□□□□ -1.19
COL3A1P02461 MIR4260-201ENST00000583107 67 ntBASIC7.59□□□□□ -1.19
COL3A1P02461 AC022467.1-201ENST00000614738 749 ntBASIC7.59□□□□□ -1.19
COL3A1P02461 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL3A1P02461 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL3A1P02461 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC7.59□□□□□ -1.19
COL3A1P02461 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL3A1P02461 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL3A1P02461 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC7.59□□□□□ -1.2
COL3A1P02461 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC7.58□□□□□ -1.2
COL3A1P02461 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
COL3A1P02461 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
COL3A1P02461 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
COL3A1P02461 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL3A1P02461 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC7.58□□□□□ -1.2
COL3A1P02461 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL3A1P02461 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
COL3A1P02461 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC7.58□□□□□ -1.2
COL3A1P02461 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL3A1P02461 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC7.58□□□□□ -1.2
COL3A1P02461 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL3A1P02461 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
COL3A1P02461 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL3A1P02461 RNA5SP326-201ENST00000363209 110 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 SNORA51.1-201ENST00000363243 140 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 BX510359.3-201ENST00000422168 306 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 OR6D1P-201ENST00000436165 939 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC7.58□□□□□ -1.2
COL3A1P02461 NPM1P19-201ENST00000450070 712 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 AC099521.1-201ENST00000482557 334 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC7.58□□□□□ -1.2
COL3A1P02461 snoU109.5-201ENST00000516231 132 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC7.58□□□□□ -1.2
COL3A1P02461 NPM1P42-201ENST00000560329 862 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL3A1P02461 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL3A1P02461 MIR3176-201ENST00000582210 90 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC7.58□□□□□ -1.2
COL3A1P02461 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC7.58□□□□□ -1.2
COL3A1P02461 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC7.58□□□□□ -1.2
COL3A1P02461 AL118522.2-201ENST00000616045 615 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC7.58□□□□□ -1.2
COL3A1P02461 AC114786.1-201ENST00000512892 1415 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
COL3A1P02461 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC7.58□□□□□ -1.2
COL3A1P02461 AC117409.1-201ENST00000470499 1310 ntBASIC7.58□□□□□ -1.2
COL3A1P02461 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC7.58□□□□□ -1.2
COL3A1P02461 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL3A1P02461 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC7.58□□□□□ -1.2
COL3A1P02461 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL3A1P02461 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC7.58□□□□□ -1.2
COL3A1P02461 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL3A1P02461 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
COL3A1P02461 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL3A1P02461 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL3A1P02461 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC7.57□□□□□ -1.2
COL3A1P02461 AC012075.1-201ENST00000436549 580 ntBASIC7.57□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms