Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHOX2O60902 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHOX2O60902 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SHOX2O60902 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
SHOX2O60902 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.9□□□□□ -1.46
SHOX2O60902 RNU105B-201ENST00000364478 208 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 RNA5SP140-201ENST00000364524 92 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.9□□□□□ -1.46
SHOX2O60902 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
SHOX2O60902 MTND2P12-201ENST00000417560 1252 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 GNG5P5-201ENST00000420444 220 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.9□□□□□ -1.46
SHOX2O60902 AHCYP8-201ENST00000425108 209 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.9□□□□□ -1.46
SHOX2O60902 CLNS1AP1-201ENST00000435954 682 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 TAAR4P-201ENST00000454843 1039 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 PFN1P6-201ENST00000476786 399 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 USP9YP2-201ENST00000504503 1000 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC5.9□□□□□ -1.46
SHOX2O60902 AC114940.1-201ENST00000512162 1265 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 USP9YP1-201ENST00000513521 1002 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 RAB30-209ENST00000532548 644 ntTSL 3 BASIC5.9□□□□□ -1.46
SHOX2O60902 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC5.9□□□□□ -1.46
SHOX2O60902 LINC01146-206ENST00000556684 361 ntTSL 3 BASIC5.9□□□□□ -1.46
SHOX2O60902 HMGN2P47-201ENST00000559378 272 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 AC023968.1-201ENST00000560719 475 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 AC010287.1-201ENST00000566916 357 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC5.9□□□□□ -1.46
SHOX2O60902 MIR7853-201ENST00000584820 132 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 OR7A8P-201ENST00000595427 913 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.9□□□□□ -1.46
SHOX2O60902 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHOX2O60902 RPL12P48-201ENST00000605620 304 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 AP003108.4-201ENST00000623917 878 ntBASIC5.9□□□□□ -1.46
SHOX2O60902 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC5.9□□□□□ -1.46
SHOX2O60902 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC5.9□□□□□ -1.46
SHOX2O60902 ASB8-218ENST00000629941 278 ntTSL 5 BASIC5.9□□□□□ -1.46
SHOX2O60902 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
SHOX2O60902 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
SHOX2O60902 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
SHOX2O60902 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SHOX2O60902 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.9□□□□□ -1.47
SHOX2O60902 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SHOX2O60902 AP001157.1-201ENST00000550837 2339 ntBASIC5.9□□□□□ -1.47
SHOX2O60902 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.89□□□□□ -1.47
SHOX2O60902 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SHOX2O60902 RN7SKP191-201ENST00000364713 306 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 ASPH-204ENST00000389204 1290 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SHOX2O60902 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SHOX2O60902 AC005522.1-201ENST00000395416 346 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 E2F6P1-201ENST00000428850 745 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 RPL3P11-201ENST00000434028 1146 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 NDUFB4P8-201ENST00000435351 367 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC5.89□□□□□ -1.47
SHOX2O60902 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.89□□□□□ -1.47
SHOX2O60902 AC004129.2-201ENST00000457229 287 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 EIF3LP2-201ENST00000457262 807 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 RPS3AP49-201ENST00000472161 790 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
SHOX2O60902 AC018645.1-201ENST00000505003 109 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC5.89□□□□□ -1.47
SHOX2O60902 SCARNA11.1-201ENST00000516918 132 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC5.89□□□□□ -1.47
SHOX2O60902 OR8A2P-201ENST00000528631 952 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC5.89□□□□□ -1.47
SHOX2O60902 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.89□□□□□ -1.47
SHOX2O60902 AC107958.1-201ENST00000556576 290 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.89□□□□□ -1.47
SHOX2O60902 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.89□□□□□ -1.47
SHOX2O60902 AC040958.1-201ENST00000561102 201 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC5.89□□□□□ -1.47
SHOX2O60902 AC114477.1-201ENST00000605097 605 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC5.89□□□□□ -1.47
SHOX2O60902 AL137000.1-201ENST00000610528 1244 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
SHOX2O60902 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.89□□□□□ -1.47
SHOX2O60902 AC239868.2-201ENST00000564237 4527 ntBASIC5.89□□□□□ -1.47
SHOX2O60902 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
SHOX2O60902 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.89□□□□□ -1.47
SHOX2O60902 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.89□□□□□ -1.47
SHOX2O60902 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.89□□□□□ -1.47
SHOX2O60902 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SHOX2O60902 AC079248.1-201ENST00000427568 1546 ntBASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms