Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 RNFT1P3-201ENST00000340898 1052 ntBASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AL096800.1-201ENST00000405326 893 ntBASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 RNA5SP156-201ENST00000410250 110 ntBASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 RN7SKP229-201ENST00000410465 302 ntBASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AC021269.1-201ENST00000526860 705 ntBASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 HNRNPCP1-201ENST00000556181 766 ntBASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AC090236.2-201ENST00000587933 1101 ntBASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AC108673.3-201ENST00000609183 335 ntBASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AL031658.2-201ENST00000616850 651 ntBASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 GTF2IP4-201ENST00000453092 2054 ntBASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
TM9SF3Q9HD45 MTCO1P11-201ENST00000429111 1528 ntBASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 TMSB4XP4-201ENST00000323496 618 ntBASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AC245096.1-201ENST00000413104 546 ntBASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 DPPA2P2-201ENST00000418220 897 ntBASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 SEPT14P12-201ENST00000442280 560 ntBASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AC114781.3-201ENST00000512083 142 ntBASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AC073916.1-201ENST00000545095 130 ntBASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 RNU6-84P-201ENST00000607737 102 ntBASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 AC109309.2-201ENST00000612597 332 ntBASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC6.15□□□□□ -1.42
TM9SF3Q9HD45 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
TM9SF3Q9HD45 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
TM9SF3Q9HD45 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
TM9SF3Q9HD45 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
TM9SF3Q9HD45 RBMY1HP-201ENST00000382759 1389 ntBASIC6.15□□□□□ -1.43
TM9SF3Q9HD45 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.15□□□□□ -1.43
TM9SF3Q9HD45 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
TM9SF3Q9HD45 PSG10P-201ENST00000501199 1500 ntBASIC6.15□□□□□ -1.43
TM9SF3Q9HD45 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 TMSB4XP2-201ENST00000335179 210 ntBASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 AC087752.1-201ENST00000391360 558 ntBASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 AL360271.1-201ENST00000395679 510 ntBASIC6.14□□□□□ -1.43
TM9SF3Q9HD45 RNA5SP178-201ENST00000410380 128 ntBASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms