Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC008753.1-201ENST00000423096 284 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 GAPDHP57-201ENST00000424400 585 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AHCYP8-201ENST00000425108 209 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 ETF1P3-201ENST00000430422 1160 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 RPS10P21-201ENST00000430654 475 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 GTF2IP3-201ENST00000433887 494 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 FABP5P2-201ENST00000439042 408 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 SEPT14P24-201ENST00000447236 180 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC092685.1-201ENST00000447960 1243 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 FAM155A-IT1-201ENST00000449551 819 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AL390728.3-201ENST00000452704 270 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 PTGES3P5-201ENST00000455109 434 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 RPL7P32-201ENST00000457119 744 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 PGBD4P1-201ENST00000473644 407 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 RN7SL259P-201ENST00000478499 253 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC107398.1-201ENST00000486904 505 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 RPS27AP16-201ENST00000492222 470 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 RN7SL187P-201ENST00000495587 303 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 MAL2-205ENST00000521048 575 ntTSL 4 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC013701.1-201ENST00000522657 465 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 OR9L1P-201ENST00000529493 933 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC090826.1-203ENST00000569235 490 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC012254.4-201ENST00000588843 273 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC025588.2-201ENST00000604851 466 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AL590032.1-201ENST00000604920 252 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC112694.2-201ENST00000623697 768 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC026422.1-201ENST00000623961 452 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 MBD5-221ENST00000637159 902 ntTSL 5 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC139713.2-210ENST00000641741 992 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 NCOA4P2-201ENST00000340589 1813 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 AC004023.1-201ENST00000561473 1744 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 RNA5SP382-201ENST00000363355 112 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 AL021331.1-201ENST00000402817 582 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 CYCSP17-201ENST00000407870 315 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 OR2X1P-201ENST00000421144 687 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 NAP1L4P2-201ENST00000425958 899 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 USP9YP11-201ENST00000427537 717 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 OR6K5P-201ENST00000447050 945 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 RPL7L1P3-201ENST00000455249 689 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 GTF2IP12-201ENST00000456547 356 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 RPS20P4-201ENST00000461659 355 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 AL157777.1-201ENST00000468100 304 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 RN7SL790P-201ENST00000474043 298 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 RPL34P33-201ENST00000486062 334 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 RPS12P31-201ENST00000491419 398 ntBASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
TRIM39Q9HCM9 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms