Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
CCDC112Q8NEF3 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC112Q8NEF3 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC112Q8NEF3 AP001029.2-203ENST00000589795 4910 ntBASIC6.58□□□□□ -1.36
CCDC112Q8NEF3 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.58□□□□□ -1.36
CCDC112Q8NEF3 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AC090181.3-201ENST00000624777 1514 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 OR7A2P-201ENST00000304105 930 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AL133260.1-201ENST00000405720 405 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 RN7SKP279-201ENST00000411383 298 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 EMC3-AS1-205ENST00000438698 534 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AC092601.1-201ENST00000444526 383 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AC007383.1-201ENST00000445875 636 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 RN7SL568P-201ENST00000493069 298 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AC122718.2-201ENST00000505325 591 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 OR9G2P-201ENST00000533326 880 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 MIR4271-201ENST00000582451 67 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AC010503.3-201ENST00000594355 540 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 AL137058.3-201ENST00000624531 3099 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 MAPK10-328ENST00000641553 4009 ntBASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC112Q8NEF3 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 SNORA64.3-201ENST00000365647 134 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 UBTFL2-201ENST00000411859 1191 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AL645939.3-201ENST00000435408 225 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 LINC00328-2P-201ENST00000436585 219 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 SOCS5P1-201ENST00000440415 949 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC023271.1-201ENST00000445936 1090 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 RN7SL197P-201ENST00000466981 299 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 KHDC1P1-201ENST00000511053 508 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 RNA5SP418-201ENST00000515951 117 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC078899.1-201ENST00000521432 1185 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AP001000.1-201ENST00000526843 742 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC084824.2-201ENST00000548906 345 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 MT1CP-201ENST00000567054 174 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 PPIAP14-201ENST00000577627 496 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 RN7SL230P-201ENST00000580835 303 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AL133481.2-203ENST00000607558 139 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AL008582.1-201ENST00000609612 442 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 AC015712.7-201ENST00000615211 635 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 PARP4P2-201ENST00000446672 3326 ntBASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC112Q8NEF3 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC112Q8NEF3 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC112Q8NEF3 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC112Q8NEF3 RNA5SP308-201ENST00000362532 115 ntBASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 151.4 ms