Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC6.03□□□□□ -1.44
MSH3P20585 AL590399.4-201ENST00000436561 601 ntBASIC6.03□□□□□ -1.44
MSH3P20585 AC023141.3-201ENST00000436698 278 ntBASIC6.03□□□□□ -1.44
MSH3P20585 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC6.03□□□□□ -1.44
MSH3P20585 AL353662.1-201ENST00000439099 327 ntBASIC6.03□□□□□ -1.44
MSH3P20585 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSH3P20585 ZNF619P1-201ENST00000446539 752 ntBASIC6.03□□□□□ -1.44
MSH3P20585 FTLP8-201ENST00000446770 267 ntBASIC6.03□□□□□ -1.44
MSH3P20585 AC097463.1-201ENST00000447288 481 ntBASIC6.03□□□□□ -1.44
MSH3P20585 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH3P20585 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC6.03□□□□□ -1.44
MSH3P20585 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.03□□□□□ -1.44
MSH3P20585 PRMT5P1-201ENST00000514351 598 ntBASIC6.03□□□□□ -1.44
MSH3P20585 RNA5SP473-201ENST00000516402 125 ntBASIC6.03□□□□□ -1.44
MSH3P20585 RNU6-964P-201ENST00000516524 69 ntBASIC6.03□□□□□ -1.44
MSH3P20585 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.03□□□□□ -1.44
MSH3P20585 TPM3P3-201ENST00000521343 354 ntBASIC6.03□□□□□ -1.44
MSH3P20585 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH3P20585 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSH3P20585 AC006512.2-201ENST00000543250 486 ntBASIC6.03□□□□□ -1.44
MSH3P20585 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.03□□□□□ -1.44
MSH3P20585 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.03□□□□□ -1.44
MSH3P20585 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC6.03□□□□□ -1.44
MSH3P20585 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC6.03□□□□□ -1.44
MSH3P20585 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH3P20585 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.03□□□□□ -1.44
MSH3P20585 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH3P20585 CFTRP2-201ENST00000634304 199 ntBASIC6.03□□□□□ -1.44
MSH3P20585 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.03□□□□□ -1.44
MSH3P20585 AC138627.1-204ENST00000641894 765 ntBASIC6.03□□□□□ -1.44
MSH3P20585 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSH3P20585 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH3P20585 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.03□□□□□ -1.44
MSH3P20585 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH3P20585 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
MSH3P20585 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSH3P20585 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.03□□□□□ -1.44
MSH3P20585 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSH3P20585 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6.02□□□□□ -1.44
MSH3P20585 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
MSH3P20585 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSH3P20585 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.02□□□□□ -1.45
MSH3P20585 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.02□□□□□ -1.45
MSH3P20585 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.02□□□□□ -1.45
MSH3P20585 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.02□□□□□ -1.45
MSH3P20585 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSH3P20585 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSH3P20585 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.02□□□□□ -1.45
MSH3P20585 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
MSH3P20585 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSH3P20585 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSH3P20585 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.02□□□□□ -1.45
MSH3P20585 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
MSH3P20585 RNA5SP431-201ENST00000410312 120 ntBASIC6.02□□□□□ -1.45
MSH3P20585 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.02□□□□□ -1.45
MSH3P20585 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC6.02□□□□□ -1.45
MSH3P20585 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.02□□□□□ -1.45
MSH3P20585 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC6.02□□□□□ -1.45
MSH3P20585 BX679664.2-201ENST00000439282 283 ntBASIC6.02□□□□□ -1.45
MSH3P20585 TRIM60P16-201ENST00000444048 694 ntBASIC6.02□□□□□ -1.45
MSH3P20585 RN7SL170P-201ENST00000487098 295 ntBASIC6.02□□□□□ -1.45
MSH3P20585 AC083795.1-201ENST00000491760 320 ntBASIC6.02□□□□□ -1.45
MSH3P20585 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.02□□□□□ -1.45
MSH3P20585 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC6.02□□□□□ -1.45
MSH3P20585 RN7SKP35-201ENST00000517210 151 ntBASIC6.02□□□□□ -1.45
MSH3P20585 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC6.02□□□□□ -1.45
MSH3P20585 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSH3P20585 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC6.02□□□□□ -1.45
MSH3P20585 MIR4271-201ENST00000582451 67 ntBASIC6.02□□□□□ -1.45
MSH3P20585 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSH3P20585 AC009237.12-201ENST00000604755 742 ntBASIC6.02□□□□□ -1.45
MSH3P20585 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSH3P20585 AC092266.1-201ENST00000610958 165 ntBASIC6.02□□□□□ -1.45
MSH3P20585 AC004801.6-201ENST00000616571 978 ntBASIC6.02□□□□□ -1.45
MSH3P20585 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.02□□□□□ -1.45
MSH3P20585 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSH3P20585 AC006600.2-201ENST00000624834 2506 ntBASIC6.02□□□□□ -1.45
MSH3P20585 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6.02□□□□□ -1.45
MSH3P20585 AL449283.1-201ENST00000602631 3403 ntBASIC6.02□□□□□ -1.45
MSH3P20585 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.01□□□□□ -1.45
MSH3P20585 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSH3P20585 AC093225.1-201ENST00000506867 1408 ntBASIC6.01□□□□□ -1.45
MSH3P20585 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
MSH3P20585 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.01□□□□□ -1.45
MSH3P20585 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSH3P20585 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
MSH3P20585 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
MSH3P20585 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC6.01□□□□□ -1.45
MSH3P20585 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.01□□□□□ -1.45
MSH3P20585 GNG5P2-201ENST00000372054 207 ntBASIC6.01□□□□□ -1.45
MSH3P20585 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSH3P20585 AL096800.1-201ENST00000405326 893 ntBASIC6.01□□□□□ -1.45
MSH3P20585 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.01□□□□□ -1.45
MSH3P20585 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.01□□□□□ -1.45
MSH3P20585 UBE2V2P3-201ENST00000433562 437 ntBASIC6.01□□□□□ -1.45
MSH3P20585 AC007679.3-201ENST00000434035 414 ntBASIC6.01□□□□□ -1.45
MSH3P20585 PNKDP1-201ENST00000435914 430 ntBASIC6.01□□□□□ -1.45
MSH3P20585 AMYP1-201ENST00000440059 1023 ntBASIC6.01□□□□□ -1.45
MSH3P20585 AC016027.4-201ENST00000450866 277 ntBASIC6.01□□□□□ -1.45
MSH3P20585 RPL5P16-201ENST00000471467 790 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 145.8 ms