Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RN7SKP248-201ENST00000516278 305 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC5.42□□□□□ -1.54
LMX1BO60663 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 OR8K2P-201ENST00000524645 927 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.42□□□□□ -1.54
LMX1BO60663 OR4A6P-201ENST00000534364 970 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.42□□□□□ -1.54
LMX1BO60663 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.42□□□□□ -1.54
LMX1BO60663 AC023968.1-201ENST00000560719 475 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 AP000919.1-201ENST00000582850 985 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.42□□□□□ -1.54
LMX1BO60663 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 AC067773.1-201ENST00000603284 1094 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 RPAP2P1-201ENST00000603626 1168 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
LMX1BO60663 MIR7159-201ENST00000620587 66 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC5.42□□□□□ -1.54
LMX1BO60663 AC116667.2-201ENST00000641075 823 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 AL139254.3-201ENST00000641097 674 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 OR7A1P-202ENST00000641542 1158 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.42□□□□□ -1.54
LMX1BO60663 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 ZNF101P1-201ENST00000435701 1720 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC5.42□□□□□ -1.54
LMX1BO60663 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
LMX1BO60663 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.42□□□□□ -1.54
LMX1BO60663 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.41□□□□□ -1.54
LMX1BO60663 AL136984.1-201ENST00000607611 1893 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.41□□□□□ -1.54
LMX1BO60663 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
LMX1BO60663 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.41□□□□□ -1.54
LMX1BO60663 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC5.41□□□□□ -1.54
LMX1BO60663 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
LMX1BO60663 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.41□□□□□ -1.54
LMX1BO60663 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 SNORA70.9-201ENST00000384370 135 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC5.41□□□□□ -1.54
LMX1BO60663 AC015977.1-201ENST00000418887 292 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC5.41□□□□□ -1.54
LMX1BO60663 OSTCP4-201ENST00000424397 449 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC5.41□□□□□ -1.54
LMX1BO60663 RPS7P14-201ENST00000426405 583 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 AL354707.3-201ENST00000427308 331 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.41□□□□□ -1.54
LMX1BO60663 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.41□□□□□ -1.54
LMX1BO60663 RPS29P14-201ENST00000431518 171 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 MTCO3P43-201ENST00000440974 771 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.41□□□□□ -1.54
LMX1BO60663 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.41□□□□□ -1.54
LMX1BO60663 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 RANP2-201ENST00000456833 229 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 AL445687.2-201ENST00000458156 728 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 AL355032.1-201ENST00000472981 438 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 RPL7P51-201ENST00000490532 749 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 GM2AP2-201ENST00000491764 562 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 AGGF1P3-201ENST00000493675 1213 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.41□□□□□ -1.54
LMX1BO60663 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.41□□□□□ -1.54
LMX1BO60663 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.41□□□□□ -1.54
LMX1BO60663 HMGN1P17-201ENST00000513734 295 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 ZNF519P4-201ENST00000514008 125 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 IGKV3D-34-201ENST00000522638 302 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
LMX1BO60663 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.41□□□□□ -1.54
LMX1BO60663 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC5.41□□□□□ -1.54
LMX1BO60663 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC5.41□□□□□ -1.54
LMX1BO60663 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC5.41□□□□□ -1.54
LMX1BO60663 AC020978.7-201ENST00000575953 1187 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 AC126365.2-201ENST00000580630 379 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 RNU4ATAC-201ENST00000580972 127 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.41□□□□□ -1.54
LMX1BO60663 AP000894.4-201ENST00000610185 483 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 AL096712.1-201ENST00000614561 159 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 MIR4302-201ENST00000638058 60 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
LMX1BO60663 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.41□□□□□ -1.54
LMX1BO60663 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 AC009135.2-201ENST00000624136 1768 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms