Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA3O43365 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXA3O43365 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
HOXA3O43365 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA3O43365 ELOCP32-201ENST00000548625 324 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA3O43365 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXA3O43365 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA3O43365 FCF1-203ENST00000553615 954 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXA3O43365 BMS1P15-201ENST00000554269 1141 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA3O43365 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXA3O43365 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXA3O43365 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA3O43365 EEF1B2P1-201ENST00000567221 672 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA3O43365 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA3O43365 AC134669.1-201ENST00000581275 672 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 RN7SL66P-201ENST00000582099 264 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 MIR4428-201ENST00000584884 73 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 AC015801.1-201ENST00000585651 153 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 DEFB131E-202ENST00000602581 683 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 AL590229.1-201ENST00000603497 542 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA3O43365 AL645933.2-201ENST00000606743 1207 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXA3O43365 AC009163.6-201ENST00000612367 342 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 AL133243.1-201ENST00000614487 366 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 AC025162.2-201ENST00000619602 560 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 RPL23AP61-201ENST00000623642 466 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 AC008626.2-201ENST00000624425 248 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 AC140479.4-205ENST00000636339 820 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 AC022819.1-201ENST00000563495 3910 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA3O43365 AC006042.3-201ENST00000454684 1469 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC5.74□□□□□ -1.49
HOXA3O43365 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXA3O43365 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA3O43365 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXA3O43365 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
HOXA3O43365 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA3O43365 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA3O43365 PKP4-AS1-201ENST00000342892 4067 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA3O43365 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA3O43365 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA3O43365 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
HOXA3O43365 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA3O43365 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA3O43365 AC073342.2-201ENST00000595842 1800 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 C11orf54-202ENST00000354421 1733 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA3O43365 AC079178.2-201ENST00000439323 1624 ntBASIC5.74□□□□□ -1.49
HOXA3O43365 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA3O43365 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA3O43365 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 AP002833.3-201ENST00000625075 2265 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 ADGRB3-201ENST00000238918 2927 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXA3O43365 ZBTB18-201ENST00000358704 3851 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXA3O43365 AL589993.1-201ENST00000407450 2524 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
HOXA3O43365 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 SP140-205ENST00000420434 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 SCGB1A1-201ENST00000278282 441 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HOXA3O43365 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 RNA5SP27-201ENST00000363839 119 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 RNU6-304P-201ENST00000364855 107 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 RNU6-1055P-201ENST00000391085 107 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 LDHAP5-201ENST00000394996 622 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 ARSFP1-201ENST00000398758 477 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 AL021407.1-201ENST00000404531 386 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 Y_RNA.619-201ENST00000410951 90 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXA3O43365 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXA3O43365 RPL34P19-201ENST00000415903 342 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC5.73□□□□□ -1.49
HOXA3O43365 AC114752.2-201ENST00000424119 404 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 AL593851.1-201ENST00000426171 157 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 AC097721.1-201ENST00000427150 1253 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 AC096632.2-201ENST00000438139 1239 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 GOT2P2-201ENST00000450663 1251 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXA3O43365 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXA3O43365 GAPDHP53-201ENST00000458397 924 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 RN7SL372P-201ENST00000461982 298 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 AC117395.2-201ENST00000463122 1128 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXA3O43365 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA3O43365 AC091860.1-201ENST00000505723 432 ntBASIC5.73□□□□□ -1.49
HOXA3O43365 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXA3O43365 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms