Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AP000866.6-201ENST00000638898 3579 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 MIPEPP2-201ENST00000422560 1819 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC3Q9BQI4 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC3Q9BQI4 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.96□□□□□ -1.45
CCDC3Q9BQI4 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.45
CCDC3Q9BQI4 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC5.96□□□□□ -1.45
CCDC3Q9BQI4 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 OR52B3P-201ENST00000314715 928 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 MIR323A-201ENST00000362199 86 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 RNU11-6P-201ENST00000391127 133 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AC087752.1-201ENST00000391360 558 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 RNA5SP178-201ENST00000410380 128 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 RN7SKP229-201ENST00000410465 302 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 CYP4F30P-202ENST00000420048 405 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 KATNBL1P2-201ENST00000433311 835 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AC016908.1-201ENST00000442571 1219 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 OR13K1P-201ENST00000444577 975 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AL161636.2-201ENST00000445179 927 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 RN7SL193P-201ENST00000491708 276 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 KCTD9P4-201ENST00000526766 1166 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AC007448.1-201ENST00000582714 234 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AC011497.2-201ENST00000600255 639 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 MIR6886-201ENST00000619864 61 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 MAPK10-287ENST00000641217 3037 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AC011416.1-201ENST00000514947 1732 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 ZNF402P-201ENST00000404435 3100 ntBASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC3Q9BQI4 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 TRIM60P16-201ENST00000444048 694 ntBASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 RN7SL214P-201ENST00000487317 265 ntBASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 439.5 ms