Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC026782.2-201ENST00000510845 636 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 SNX18P23-201ENST00000510867 677 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 IGKV2D-38-201ENST00000518423 240 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 IGHV1-14-201ENST00000523391 241 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AL390726.5-202ENST00000564800 256 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC016180.1-201ENST00000567945 403 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 MIR4700-201ENST00000578311 74 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC245128.3-201ENST00000594721 748 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AL157899.1-201ENST00000604110 936 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 5S_rRNA.23-201ENST00000612086 102 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AL096712.1-201ENST00000614561 159 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC003001.2-201ENST00000616294 831 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 MIR6730-201ENST00000622213 67 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC127071.2-201ENST00000623293 527 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 AC020656.2-201ENST00000613291 5309 ntBASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PDLIM3Q53GG5 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.34□□□□□ -1.56
PDLIM3Q53GG5 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
PDLIM3Q53GG5 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC5.34□□□□□ -1.56
PDLIM3Q53GG5 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.34□□□□□ -1.56
PDLIM3Q53GG5 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
PDLIM3Q53GG5 AL355377.1-201ENST00000621125 1653 ntBASIC5.34□□□□□ -1.56
PDLIM3Q53GG5 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
PDLIM3Q53GG5 DLEU2L-201ENST00000371086 3555 ntBASIC5.34□□□□□ -1.56
PDLIM3Q53GG5 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
PDLIM3Q53GG5 Z95114.1-201ENST00000624264 14574 ntBASIC5.34□□□□□ -1.56
PDLIM3Q53GG5 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC004656.1-201ENST00000568479 4951 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 NEK2P2-201ENST00000438441 1338 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 Y_RNA.62-201ENST00000362840 99 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 RN7SKP130-201ENST00000364924 301 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 SNORA17A-201ENST00000391185 133 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 RNA5SP474-201ENST00000391234 90 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 SNORA77.2-201ENST00000408571 112 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 RN7SKP296-201ENST00000411185 341 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC007568.1-201ENST00000422912 471 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 SNRPFP2-201ENST00000440710 251 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC114878.1-201ENST00000441166 358 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 MTATP6P1-201ENST00000514057 681 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 SUMO2P19-201ENST00000518920 295 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AP005639.1-201ENST00000526939 192 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AP003168.1-201ENST00000530091 307 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC027026.1-201ENST00000532323 742 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC022387.2-201ENST00000604050 448 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AL590032.1-201ENST00000604920 252 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 KATNBL1P1-201ENST00000605192 748 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AL512624.1-201ENST00000613638 469 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 DAPL1-204ENST00000621326 671 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 SNORA17.5-201ENST00000630429 132 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC097063.1-201ENST00000426714 1797 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC011455.2-201ENST00000599320 3336 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 AC068769.1-201ENST00000474767 2426 ntBASIC5.33□□□□□ -1.56
PDLIM3Q53GG5 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.32□□□□□ -1.56
PDLIM3Q53GG5 TTC41P-205ENST00000551270 3963 ntBASIC5.32□□□□□ -1.56
PDLIM3Q53GG5 CUL4AP1-201ENST00000514750 1863 ntBASIC5.32□□□□□ -1.56
PDLIM3Q53GG5 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms