Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 OR52B3P-201ENST00000314715 928 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 RNA5SP477-201ENST00000362639 119 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 RNU1-19P-201ENST00000363306 165 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 RN7SKP292-201ENST00000365522 317 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AL096800.1-201ENST00000405326 893 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC083862.1-201ENST00000427378 1242 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC092017.2-201ENST00000427600 362 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 RPS27P18-201ENST00000431701 247 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC112492.2-201ENST00000432774 1030 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 TAAR4P-201ENST00000454843 1039 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 UBFD1P1-201ENST00000473259 814 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC117395.1-201ENST00000487390 403 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 NDUFB5P1-201ENST00000508134 564 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC044860.2-201ENST00000561005 179 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC009268.1-201ENST00000561352 1203 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 MIR4701-201ENST00000583094 63 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 VN1R81P-201ENST00000602085 372 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 U1.41-201ENST00000617626 165 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC006213.5-201ENST00000619673 288 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC018445.2-201ENST00000622987 260 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC022417.1-201ENST00000624768 1303 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 SAMMSON-210ENST00000641260 1308 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 Z83820.1-201ENST00000456978 1499 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 AC105114.1-201ENST00000624795 1862 ntBASIC6.13□□□□□ -1.43
COL28A1Q2UY09 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL28A1Q2UY09 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 OR2AT2P-201ENST00000413438 905 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AC096537.2-201ENST00000413707 714 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 EEF1B2P8-201ENST00000414101 671 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 RPS7P12-201ENST00000422385 582 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 LDHAP2-201ENST00000437325 985 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 GAPDHP58-201ENST00000438477 1006 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 YWHAEP1-201ENST00000453697 763 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 TPRKBP1-201ENST00000456243 481 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 RN7SL799P-201ENST00000475891 298 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AL158068.1-201ENST00000506116 616 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 OR52H2P-201ENST00000514607 902 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AL133399.1-201ENST00000527476 298 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 EIF4A2P5-201ENST00000529914 499 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 OR4A6P-201ENST00000534364 970 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AL513548.1-201ENST00000562904 1724 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms