Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.65□□□□□ -1.5
FOXA1P55317 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXA1P55317 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXA1P55317 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXA1P55317 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
FOXA1P55317 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXA1P55317 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.65□□□□□ -1.5
FOXA1P55317 RNU11-201ENST00000387069 134 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 AC087752.1-201ENST00000391360 558 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 AL354890.1-201ENST00000413730 346 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.65□□□□□ -1.5
FOXA1P55317 FAM183DP-201ENST00000421987 399 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.65□□□□□ -1.5
FOXA1P55317 AC015983.1-201ENST00000441577 373 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 AC073072.2-201ENST00000447425 348 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC5.65□□□□□ -1.5
FOXA1P55317 RPS27P20-201ENST00000492051 246 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 RN7SL362P-201ENST00000494228 267 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.65□□□□□ -1.5
FOXA1P55317 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
FOXA1P55317 AC108103.1-201ENST00000511286 446 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 RN7SKP35-201ENST00000517210 151 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.65□□□□□ -1.5
FOXA1P55317 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.65□□□□□ -1.5
FOXA1P55317 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.65□□□□□ -1.5
FOXA1P55317 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.65□□□□□ -1.5
FOXA1P55317 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.65□□□□□ -1.5
FOXA1P55317 AL163952.1-202ENST00000569625 600 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.65□□□□□ -1.5
FOXA1P55317 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC5.65□□□□□ -1.5
FOXA1P55317 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
FOXA1P55317 AL360012.1-201ENST00000602813 131 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
FOXA1P55317 AC096708.4-201ENST00000620563 552 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 AL136228.1-201ENST00000622221 319 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.65□□□□□ -1.5
FOXA1P55317 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC5.65□□□□□ -1.5
FOXA1P55317 AC079776.5-201ENST00000641920 211 ntBASIC5.65□□□□□ -1.5
FOXA1P55317 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
FOXA1P55317 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
FOXA1P55317 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
FOXA1P55317 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.65□□□□□ -1.51
FOXA1P55317 AC232271.1-201ENST00000602455 2715 ntBASIC5.65□□□□□ -1.51
FOXA1P55317 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
FOXA1P55317 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC5.65□□□□□ -1.51
FOXA1P55317 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
FOXA1P55317 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
FOXA1P55317 AL158152.1-201ENST00000602652 1435 ntBASIC5.65□□□□□ -1.51
FOXA1P55317 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
FOXA1P55317 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
FOXA1P55317 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.64□□□□□ -1.51
FOXA1P55317 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
FOXA1P55317 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
FOXA1P55317 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
FOXA1P55317 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
FOXA1P55317 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
FOXA1P55317 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
FOXA1P55317 CASC19-260ENST00000641828 2001 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.64□□□□□ -1.51
FOXA1P55317 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
FOXA1P55317 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.64□□□□□ -1.51
FOXA1P55317 MIR191-201ENST00000384873 92 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 MIR130B-202ENST00000385018 82 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.64□□□□□ -1.51
FOXA1P55317 GAPDHP75-201ENST00000433910 943 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 SUMO2P8-201ENST00000434672 286 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
FOXA1P55317 RPS23P9-201ENST00000448848 438 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 KF459542.1-201ENST00000450908 553 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 CEACAMP11-201ENST00000455211 583 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.64□□□□□ -1.51
FOXA1P55317 AC128716.1-201ENST00000475129 166 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 AC113367.2-201ENST00000505749 160 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC5.64□□□□□ -1.51
FOXA1P55317 MRPS5P3-201ENST00000515577 166 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 IGKV3D-25-201ENST00000519599 235 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.64□□□□□ -1.51
FOXA1P55317 DPPA3P2-202ENST00000557188 1219 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC5.64□□□□□ -1.51
FOXA1P55317 ZNF322P1-201ENST00000568013 1209 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC5.64□□□□□ -1.51
FOXA1P55317 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.64□□□□□ -1.51
FOXA1P55317 uc_338.31-201ENST00000615595 186 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 AC004801.6-201ENST00000616571 978 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 MIR6721-201ENST00000617181 87 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 FAM27E2-201ENST00000619668 403 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 AL109924.4-201ENST00000623089 670 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.64□□□□□ -1.51
FOXA1P55317 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
FOXA1P55317 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.64□□□□□ -1.51
FOXA1P55317 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
FOXA1P55317 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
FOXA1P55317 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
FOXA1P55317 AC104964.3-201ENST00000606115 2860 ntBASIC5.64□□□□□ -1.51
FOXA1P55317 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
FOXA1P55317 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
FOXA1P55317 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
FOXA1P55317 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
FOXA1P55317 AC123769.1-201ENST00000530992 3192 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 AL355488.2-201ENST00000609909 2850 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms