Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 IGLV3-4-201ENST00000432300 244 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 AL021939.1-201ENST00000441868 886 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 AL033528.1-201ENST00000453780 140 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AP003774.3-201ENST00000457725 985 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 RPL7AP56-201ENST00000476420 791 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AL449212.1-201ENST00000499853 517 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC7.36□□□□□ -1.23
MSX1P28360 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC7.36□□□□□ -1.23
MSX1P28360 AC068898.2-201ENST00000514425 597 ntTSL 4 BASIC7.36□□□□□ -1.23
MSX1P28360 RNU6-1225P-201ENST00000516336 65 ntBASIC7.36□□□□□ -1.23
MSX1P28360 GZMB-205ENST00000526004 819 ntTSL 3 BASIC7.36□□□□□ -1.23
MSX1P28360 AP001893.2-201ENST00000526949 202 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 DCN-209ENST00000546745 1026 ntTSL 3 BASIC7.36□□□□□ -1.23
MSX1P28360 ARL2BPP2-201ENST00000550907 489 ntBASIC7.36□□□□□ -1.23
MSX1P28360 OR4N2-203ENST00000557677 1008 ntAPPRIS P1 BASIC7.36□□□□□ -1.23
MSX1P28360 NIFKP8-201ENST00000560500 874 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AC133485.3-201ENST00000562604 262 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 AC138907.3-201ENST00000563937 262 ntTSL 3 BASIC7.36□□□□□ -1.23
MSX1P28360 RBM22P12-201ENST00000567098 1255 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AC138869.2-201ENST00000569850 262 ntTSL 3 BASIC7.36□□□□□ -1.23
MSX1P28360 LINC00674-202ENST00000590734 160 ntBASIC7.36□□□□□ -1.23
MSX1P28360 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC7.36□□□□□ -1.23
MSX1P28360 AC013553.2-201ENST00000604244 589 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AL360085.1-201ENST00000604713 532 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AC004890.3-201ENST00000605566 1095 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AC005303.1-201ENST00000607906 740 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 AC068726.1-201ENST00000610993 341 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AC103974.2-201ENST00000611319 778 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AC073348.1-201ENST00000623002 331 ntBASIC7.36□□□□□ -1.23
MSX1P28360 STK32A-209ENST00000626951 798 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 ATE1-AS1-202ENST00000636460 506 ntBASIC7.36□□□□□ -1.23
MSX1P28360 MIR3120-201ENST00000636555 81 ntBASIC7.36□□□□□ -1.23
MSX1P28360 CRNDE-214ENST00000637011 865 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 AL138756.1-201ENST00000563434 4488 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 BFAR-201ENST00000261658 3039 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 CD44-208ENST00000428726 3046 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 ATP5BP1-201ENST00000411980 1574 ntBASIC7.36□□□□□ -1.23
MSX1P28360 CLRN1-AS1-202ENST00000476886 2223 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 HSD17B4-220ENST00000513628 2225 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 NEK10-201ENST00000295720 2871 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 PDXDC1-203ENST00000450288 4171 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 SNRPB2-201ENST00000246071 2452 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 AKAP7-202ENST00000342266 2461 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 NEDD1-201ENST00000266742 4046 ntAPPRIS P1 TSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 FHL1-206ENST00000394153 2374 ntTSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 AC114786.2-201ENST00000510090 1426 ntBASIC7.35□□□□□ -1.23
MSX1P28360 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 AL645937.1-201ENST00000641739 1652 ntBASIC7.35□□□□□ -1.23
MSX1P28360 IQUB-201ENST00000324698 2891 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 C2CD5-218ENST00000545552 3471 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 AC117409.1-201ENST00000470499 1310 ntBASIC7.35□□□□□ -1.23
MSX1P28360 DDX11L16-201ENST00000507418 1306 ntBASIC7.35□□□□□ -1.23
MSX1P28360 DCAF5-208ENST00000556847 2791 ntTSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 OPRM1-205ENST00000414028 2485 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 LINC02312-201ENST00000555187 3046 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 AL034370.1-201ENST00000397254 1590 ntBASIC7.35□□□□□ -1.23
MSX1P28360 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 PVALB-201ENST00000216200 595 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 PDXDC1-201ENST00000325823 1113 ntTSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 RPL21P132-201ENST00000331267 462 ntBASIC7.35□□□□□ -1.23
MSX1P28360 HYPM-201ENST00000341016 501 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
MSX1P28360 Y_RNA.142-201ENST00000363491 102 ntBASIC7.35□□□□□ -1.23
MSX1P28360 RNU6-780P-201ENST00000391030 104 ntBASIC7.35□□□□□ -1.23
MSX1P28360 ATP5HP3-201ENST00000396994 486 ntBASIC7.35□□□□□ -1.23
MSX1P28360 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 PPP1R7-204ENST00000402734 883 ntTSL 3 BASIC7.35□□□□□ -1.23
MSX1P28360 VN1R36P-201ENST00000414936 291 ntBASIC7.35□□□□□ -1.23
MSX1P28360 AP001042.1-201ENST00000416842 487 ntTSL 3 BASIC7.35□□□□□ -1.23
MSX1P28360 USP9YP13-201ENST00000417797 480 ntBASIC7.35□□□□□ -1.23
MSX1P28360 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC7.35□□□□□ -1.23
MSX1P28360 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC7.35□□□□□ -1.23
MSX1P28360 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 OR4F13P-201ENST00000428478 931 ntBASIC7.35□□□□□ -1.23
MSX1P28360 AL512649.1-201ENST00000428997 581 ntBASIC7.35□□□□□ -1.23
MSX1P28360 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC7.35□□□□□ -1.23
MSX1P28360 RAD23BP3-201ENST00000454157 1152 ntBASIC7.35□□□□□ -1.23
MSX1P28360 NUTF2P4-201ENST00000458353 381 ntBASIC7.35□□□□□ -1.23
MSX1P28360 SSU72P8-201ENST00000473520 585 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
MSX1P28360 AC009269.1-202ENST00000484381 469 ntBASIC7.35□□□□□ -1.23
MSX1P28360 AC090013.1-201ENST00000485147 480 ntBASIC7.35□□□□□ -1.23
MSX1P28360 RN7SL445P-201ENST00000495609 293 ntBASIC7.35□□□□□ -1.23
MSX1P28360 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 AF186996.3-201ENST00000509527 964 ntBASIC7.35□□□□□ -1.23
MSX1P28360 AC091839.1-201ENST00000513087 269 ntBASIC7.35□□□□□ -1.23
MSX1P28360 PANCR-202ENST00000513690 448 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 PIGFP1-201ENST00000519180 653 ntBASIC7.35□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms