Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.26
COL5A3P25940 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL5A3P25940 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC7.21□□□□□ -1.26
COL5A3P25940 PCDH19-203ENST00000420881 7936 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL5A3P25940 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC7.21□□□□□ -1.26
COL5A3P25940 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL5A3P25940 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL5A3P25940 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL5A3P25940 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL5A3P25940 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.26
COL5A3P25940 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL5A3P25940 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL5A3P25940 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC7.21□□□□□ -1.26
COL5A3P25940 RBMY2KP-201ENST00000418221 992 ntBASIC7.21□□□□□ -1.26
COL5A3P25940 DSTNP5-201ENST00000427921 523 ntBASIC7.21□□□□□ -1.26
COL5A3P25940 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC7.21□□□□□ -1.26
COL5A3P25940 LDHAP2-201ENST00000437325 985 ntBASIC7.21□□□□□ -1.26
COL5A3P25940 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC7.21□□□□□ -1.26
COL5A3P25940 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC7.21□□□□□ -1.26
COL5A3P25940 HIGD1AP8-201ENST00000453927 274 ntBASIC7.21□□□□□ -1.26
COL5A3P25940 RN7SL352P-201ENST00000466002 277 ntBASIC7.21□□□□□ -1.26
COL5A3P25940 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC7.21□□□□□ -1.26
COL5A3P25940 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC7.21□□□□□ -1.26
COL5A3P25940 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC7.21□□□□□ -1.26
COL5A3P25940 SETP3-201ENST00000581726 813 ntBASIC7.21□□□□□ -1.26
COL5A3P25940 AC005224.3-201ENST00000584683 2140 ntBASIC7.21□□□□□ -1.26
COL5A3P25940 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC7.21□□□□□ -1.26
COL5A3P25940 AC091193.1-201ENST00000604640 448 ntBASIC7.21□□□□□ -1.26
COL5A3P25940 AL049539.1-201ENST00000611964 459 ntBASIC7.21□□□□□ -1.26
COL5A3P25940 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC7.21□□□□□ -1.26
COL5A3P25940 AC092070.2-203ENST00000598377 3644 ntBASIC7.21□□□□□ -1.26
COL5A3P25940 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL5A3P25940 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL5A3P25940 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC7.21□□□□□ -1.26
COL5A3P25940 TEK-202ENST00000406359 3935 ntTSL 2 BASIC7.21□□□□□ -1.26
COL5A3P25940 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC7.2□□□□□ -1.26
COL5A3P25940 AC023421.1-201ENST00000590535 1785 ntBASIC7.2□□□□□ -1.26
COL5A3P25940 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL5A3P25940 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL5A3P25940 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC7.2□□□□□ -1.26
COL5A3P25940 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL5A3P25940 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL5A3P25940 F5-202ENST00000367797 7024 ntAPPRIS P2 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL5A3P25940 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
COL5A3P25940 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC7.2□□□□□ -1.26
COL5A3P25940 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC7.2□□□□□ -1.26
COL5A3P25940 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL5A3P25940 CDC123-202ENST00000378900 933 ntTSL 5 BASIC7.2□□□□□ -1.26
COL5A3P25940 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC7.2□□□□□ -1.26
COL5A3P25940 AL353626.3-201ENST00000413399 657 ntBASIC7.2□□□□□ -1.26
COL5A3P25940 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC7.2□□□□□ -1.26
COL5A3P25940 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC7.2□□□□□ -1.26
COL5A3P25940 AL603882.1-201ENST00000463059 681 ntBASIC7.2□□□□□ -1.26
COL5A3P25940 AC072052.1-201ENST00000496556 306 ntBASIC7.2□□□□□ -1.26
COL5A3P25940 IGLV3-24-201ENST00000517477 197 ntBASIC7.2□□□□□ -1.26
COL5A3P25940 CDH12P4-201ENST00000517835 295 ntBASIC7.2□□□□□ -1.26
COL5A3P25940 CDH12P3-201ENST00000517935 295 ntBASIC7.2□□□□□ -1.26
COL5A3P25940 CDH12P1-201ENST00000518435 295 ntBASIC7.2□□□□□ -1.26
COL5A3P25940 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC7.2□□□□□ -1.26
COL5A3P25940 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC7.2□□□□□ -1.26
COL5A3P25940 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC7.2□□□□□ -1.26
COL5A3P25940 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC7.2□□□□□ -1.26
COL5A3P25940 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC7.2□□□□□ -1.26
COL5A3P25940 CPS1-IT1-201ENST00000628368 2306 ntBASIC7.2□□□□□ -1.26
COL5A3P25940 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL5A3P25940 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL5A3P25940 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC7.2□□□□□ -1.26
COL5A3P25940 AP003119.3-201ENST00000566747 4192 ntBASIC7.2□□□□□ -1.26
COL5A3P25940 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL5A3P25940 ERG-205ENST00000398910 4954 ntTSL 5 BASIC7.19□□□□□ -1.26
COL5A3P25940 ABCA11P-202ENST00000504019 2110 ntBASIC7.19□□□□□ -1.26
COL5A3P25940 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL5A3P25940 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC7.19□□□□□ -1.26
COL5A3P25940 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC7.19□□□□□ -1.26
COL5A3P25940 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC7.19□□□□□ -1.26
COL5A3P25940 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC7.19□□□□□ -1.26
COL5A3P25940 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC7.19□□□□□ -1.26
COL5A3P25940 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
COL5A3P25940 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
COL5A3P25940 SNORA56-201ENST00000383966 129 ntBASIC7.19□□□□□ -1.26
COL5A3P25940 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC7.19□□□□□ -1.26
COL5A3P25940 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC7.19□□□□□ -1.26
COL5A3P25940 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC7.19□□□□□ -1.26
COL5A3P25940 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC7.19□□□□□ -1.26
COL5A3P25940 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC7.19□□□□□ -1.26
COL5A3P25940 AC147055.3-201ENST00000510547 851 ntBASIC7.19□□□□□ -1.26
COL5A3P25940 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC7.19□□□□□ -1.26
COL5A3P25940 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC7.19□□□□□ -1.26
COL5A3P25940 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL5A3P25940 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC7.19□□□□□ -1.26
COL5A3P25940 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC7.19□□□□□ -1.26
COL5A3P25940 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
COL5A3P25940 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC7.19□□□□□ -1.26
COL5A3P25940 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC7.19□□□□□ -1.26
COL5A3P25940 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL5A3P25940 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL5A3P25940 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL5A3P25940 ARHGAP19-202ENST00000358531 5463 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL5A3P25940 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL5A3P25940 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC7.19□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms