Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL5A1P20908 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 AL589993.1-201ENST00000407450 2524 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC5.69□□□□□ -1.5
COL5A1P20908 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.69□□□□□ -1.5
COL5A1P20908 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL5A1P20908 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.69□□□□□ -1.5
COL5A1P20908 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.69□□□□□ -1.5
COL5A1P20908 AC012075.1-201ENST00000436549 580 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 AL390119.1-201ENST00000440329 312 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 AL663074.2-201ENST00000440621 479 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.69□□□□□ -1.5
COL5A1P20908 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.69□□□□□ -1.5
COL5A1P20908 AL672167.3-201ENST00000465951 960 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 RN7SL222P-201ENST00000476452 299 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL5A1P20908 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.69□□□□□ -1.5
COL5A1P20908 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.69□□□□□ -1.5
COL5A1P20908 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.69□□□□□ -1.5
COL5A1P20908 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.69□□□□□ -1.5
COL5A1P20908 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.69□□□□□ -1.5
COL5A1P20908 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.69□□□□□ -1.5
COL5A1P20908 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 MIR8080-201ENST00000622224 89 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.69□□□□□ -1.5
COL5A1P20908 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
COL5A1P20908 AL157831.2-201ENST00000564681 3095 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
COL5A1P20908 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A1P20908 ZNF812P-201ENST00000457674 1694 ntBASIC5.68□□□□□ -1.5
COL5A1P20908 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC5.68□□□□□ -1.5
COL5A1P20908 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A1P20908 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A1P20908 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A1P20908 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC5.68□□□□□ -1.5
COL5A1P20908 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC5.68□□□□□ -1.5
COL5A1P20908 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A1P20908 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
COL5A1P20908 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A1P20908 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A1P20908 RNA5SP211-201ENST00000365516 117 ntBASIC5.68□□□□□ -1.5
COL5A1P20908 OR2W4P-201ENST00000406496 926 ntBASIC5.68□□□□□ -1.5
COL5A1P20908 MIR1286-201ENST00000408112 78 ntBASIC5.68□□□□□ -1.5
COL5A1P20908 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.68□□□□□ -1.5
COL5A1P20908 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.68□□□□□ -1.5
COL5A1P20908 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.68□□□□□ -1.5
COL5A1P20908 CFL1P1-202ENST00000432948 411 ntBASIC5.68□□□□□ -1.5
COL5A1P20908 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.68□□□□□ -1.5
COL5A1P20908 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A1P20908 AC115223.1-201ENST00000466377 870 ntBASIC5.68□□□□□ -1.5
COL5A1P20908 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.68□□□□□ -1.5
COL5A1P20908 RNA5SP228-201ENST00000516232 133 ntBASIC5.68□□□□□ -1.5
COL5A1P20908 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.68□□□□□ -1.5
COL5A1P20908 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.68□□□□□ -1.5
COL5A1P20908 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.68□□□□□ -1.5
COL5A1P20908 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.68□□□□□ -1.5
COL5A1P20908 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.68□□□□□ -1.5
COL5A1P20908 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
COL5A1P20908 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A1P20908 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
COL5A1P20908 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
COL5A1P20908 YES1P1-201ENST00000418510 1628 ntBASIC5.68□□□□□ -1.5
COL5A1P20908 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A1P20908 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.68□□□□□ -1.5
COL5A1P20908 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A1P20908 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
COL5A1P20908 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC5.68□□□□□ -1.5
COL5A1P20908 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
COL5A1P20908 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
COL5A1P20908 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.67□□□□□ -1.5
COL5A1P20908 PRNCR1-201ENST00000635449 12727 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
COL5A1P20908 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 PTCD2P2-201ENST00000415579 1095 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.67□□□□□ -1.5
COL5A1P20908 RPS12P17-201ENST00000438591 377 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 RNA5SP92-201ENST00000516437 110 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.67□□□□□ -1.5
COL5A1P20908 HMGB1P42-201ENST00000532126 553 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 AC027334.1-201ENST00000603257 310 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 AC004890.3-201ENST00000605566 1095 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 143.7 ms