Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC7.66□□□□□ -1.18
COL3A1P02461 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL3A1P02461 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC7.66□□□□□ -1.18
COL3A1P02461 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.18
COL3A1P02461 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL3A1P02461 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
COL3A1P02461 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL3A1P02461 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL3A1P02461 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
COL3A1P02461 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC7.65□□□□□ -1.18
COL3A1P02461 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC7.65□□□□□ -1.18
COL3A1P02461 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
COL3A1P02461 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
COL3A1P02461 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC7.65□□□□□ -1.18
COL3A1P02461 RN7SKP206-201ENST00000410823 293 ntBASIC7.65□□□□□ -1.18
COL3A1P02461 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC7.65□□□□□ -1.18
COL3A1P02461 AC079355.1-201ENST00000421770 223 ntBASIC7.65□□□□□ -1.18
COL3A1P02461 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC7.65□□□□□ -1.18
COL3A1P02461 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC7.65□□□□□ -1.18
COL3A1P02461 RPL36AP39-201ENST00000445859 318 ntBASIC7.65□□□□□ -1.18
COL3A1P02461 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC7.65□□□□□ -1.18
COL3A1P02461 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC7.65□□□□□ -1.18
COL3A1P02461 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC7.65□□□□□ -1.18
COL3A1P02461 OARD1-211ENST00000480585 829 ntTSL 3 BASIC7.65□□□□□ -1.18
COL3A1P02461 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC7.65□□□□□ -1.18
COL3A1P02461 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC7.65□□□□□ -1.18
COL3A1P02461 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC7.65□□□□□ -1.18
COL3A1P02461 SCARNA6.1-201ENST00000516989 238 ntBASIC7.65□□□□□ -1.18
COL3A1P02461 AC112191.2-201ENST00000522428 333 ntBASIC7.65□□□□□ -1.18
COL3A1P02461 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC7.65□□□□□ -1.18
COL3A1P02461 DCN-210ENST00000547568 823 ntTSL 3 BASIC7.65□□□□□ -1.18
COL3A1P02461 AC007346.2-201ENST00000564816 892 ntBASIC7.65□□□□□ -1.18
COL3A1P02461 SNORD95-201ENST00000579879 68 ntBASIC7.65□□□□□ -1.18
COL3A1P02461 MIR1273E-201ENST00000581165 102 ntBASIC7.65□□□□□ -1.18
COL3A1P02461 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC7.65□□□□□ -1.18
COL3A1P02461 PPATP2-201ENST00000605635 508 ntBASIC7.65□□□□□ -1.18
COL3A1P02461 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC7.65□□□□□ -1.18
COL3A1P02461 AL357153.4-201ENST00000620487 1016 ntBASIC7.65□□□□□ -1.18
COL3A1P02461 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC7.65□□□□□ -1.18
COL3A1P02461 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
COL3A1P02461 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC7.65□□□□□ -1.19
COL3A1P02461 AC008124.1-201ENST00000609803 9730 ntBASIC7.65□□□□□ -1.19
COL3A1P02461 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
COL3A1P02461 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
COL3A1P02461 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC7.64□□□□□ -1.19
COL3A1P02461 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
COL3A1P02461 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL3A1P02461 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL3A1P02461 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL3A1P02461 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL3A1P02461 AP002991.2-201ENST00000623807 2801 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
COL3A1P02461 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
COL3A1P02461 SNORD1C-201ENST00000363315 78 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC7.64□□□□□ -1.19
COL3A1P02461 RNA5SP178-201ENST00000410380 128 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC7.64□□□□□ -1.19
COL3A1P02461 AL049634.1-201ENST00000453770 1720 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL3A1P02461 RPSAP39-201ENST00000467439 883 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 DUTP1-201ENST00000493631 470 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC7.64□□□□□ -1.19
COL3A1P02461 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC7.64□□□□□ -1.19
COL3A1P02461 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC7.64□□□□□ -1.19
COL3A1P02461 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.64□□□□□ -1.19
COL3A1P02461 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC7.64□□□□□ -1.19
COL3A1P02461 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC7.64□□□□□ -1.19
COL3A1P02461 AP001496.3-201ENST00000580230 913 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
COL3A1P02461 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC7.64□□□□□ -1.19
COL3A1P02461 AC011445.2-201ENST00000599274 173 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 BNIP3P41-202ENST00000616656 861 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL3A1P02461 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL3A1P02461 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC7.64□□□□□ -1.19
COL3A1P02461 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL3A1P02461 AC140479.2-201ENST00000421567 3130 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC7.64□□□□□ -1.19
COL3A1P02461 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL3A1P02461 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL3A1P02461 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC7.64□□□□□ -1.19
COL3A1P02461 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC7.64□□□□□ -1.19
COL3A1P02461 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC7.64□□□□□ -1.19
COL3A1P02461 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL3A1P02461 AC083899.1-201ENST00000454465 3819 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 AC009962.1-201ENST00000567327 3813 ntBASIC7.64□□□□□ -1.19
COL3A1P02461 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC7.64□□□□□ -1.19
COL3A1P02461 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC7.63□□□□□ -1.19
COL3A1P02461 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL3A1P02461 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL3A1P02461 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL3A1P02461 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL3A1P02461 RPL23AP17-201ENST00000401064 499 ntBASIC7.63□□□□□ -1.19
COL3A1P02461 CYCSP51-201ENST00000443545 318 ntBASIC7.63□□□□□ -1.19
COL3A1P02461 RPL12P39-201ENST00000455456 496 ntBASIC7.63□□□□□ -1.19
COL3A1P02461 OSTCP1-201ENST00000455507 450 ntBASIC7.63□□□□□ -1.19
COL3A1P02461 UBA52P7-201ENST00000486088 380 ntBASIC7.63□□□□□ -1.19
COL3A1P02461 SNORA43.3-201ENST00000517240 103 ntBASIC7.63□□□□□ -1.19
COL3A1P02461 IGLV3-24-201ENST00000517477 197 ntBASIC7.63□□□□□ -1.19
COL3A1P02461 AC078899.1-201ENST00000521432 1185 ntBASIC7.63□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms