Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.66□□□□□ -1.5
SSX4O60224 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SSX4O60224 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.66□□□□□ -1.5
SSX4O60224 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.66□□□□□ -1.5
SSX4O60224 AL445383.1-201ENST00000554689 874 ntBASIC5.66□□□□□ -1.5
SSX4O60224 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.66□□□□□ -1.5
SSX4O60224 AC134669.1-201ENST00000581275 672 ntBASIC5.66□□□□□ -1.5
SSX4O60224 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.66□□□□□ -1.5
SSX4O60224 AC114477.1-201ENST00000605097 605 ntBASIC5.66□□□□□ -1.5
SSX4O60224 SNORD96A-201ENST00000606577 79 ntBASIC5.66□□□□□ -1.5
SSX4O60224 AC025171.4-201ENST00000607250 1047 ntBASIC5.66□□□□□ -1.5
SSX4O60224 AL445649.1-201ENST00000615941 691 ntBASIC5.66□□□□□ -1.5
SSX4O60224 AC003001.2-201ENST00000616294 831 ntBASIC5.66□□□□□ -1.5
SSX4O60224 MIR6721-201ENST00000617181 87 ntBASIC5.66□□□□□ -1.5
SSX4O60224 AL590410.1-201ENST00000617925 333 ntBASIC5.66□□□□□ -1.5
SSX4O60224 CFTRP2-201ENST00000634304 199 ntBASIC5.66□□□□□ -1.5
SSX4O60224 PSMC1P4-201ENST00000515236 1327 ntBASIC5.66□□□□□ -1.5
SSX4O60224 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.66□□□□□ -1.5
SSX4O60224 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SSX4O60224 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SSX4O60224 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SSX4O60224 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SSX4O60224 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.66□□□□□ -1.5
SSX4O60224 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.66□□□□□ -1.5
SSX4O60224 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC5.66□□□□□ -1.5
SSX4O60224 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SSX4O60224 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.65□□□□□ -1.5
SSX4O60224 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
SSX4O60224 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.65□□□□□ -1.5
SSX4O60224 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SSX4O60224 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SSX4O60224 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.65□□□□□ -1.5
SSX4O60224 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SSX4O60224 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SSX4O60224 AL442128.2-201ENST00000620246 1824 ntBASIC5.65□□□□□ -1.5
SSX4O60224 BIN2P1-201ENST00000504996 1530 ntBASIC5.65□□□□□ -1.5
SSX4O60224 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC5.65□□□□□ -1.5
SSX4O60224 AC004656.1-201ENST00000568479 4951 ntBASIC5.65□□□□□ -1.5
SSX4O60224 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SSX4O60224 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC5.65□□□□□ -1.5
SSX4O60224 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SSX4O60224 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SSX4O60224 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SSX4O60224 PPIAP24-201ENST00000328558 471 ntBASIC5.65□□□□□ -1.5
SSX4O60224 SNORA70.3-201ENST00000365075 132 ntBASIC5.65□□□□□ -1.5
SSX4O60224 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SSX4O60224 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SSX4O60224 AL050335.1-201ENST00000396909 869 ntBASIC5.65□□□□□ -1.5
SSX4O60224 AC098592.2-201ENST00000413158 265 ntBASIC5.65□□□□□ -1.5
SSX4O60224 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.65□□□□□ -1.5
SSX4O60224 AL663061.1-201ENST00000416625 580 ntBASIC5.65□□□□□ -1.5
SSX4O60224 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC5.65□□□□□ -1.5
SSX4O60224 AJ239321.1-201ENST00000424255 564 ntBASIC5.65□□□□□ -1.5
SSX4O60224 MRPS21P2-201ENST00000424704 264 ntBASIC5.65□□□□□ -1.5
SSX4O60224 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.65□□□□□ -1.5
SSX4O60224 RAB9AP5-201ENST00000437794 597 ntBASIC5.65□□□□□ -1.5
SSX4O60224 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC5.65□□□□□ -1.5
SSX4O60224 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC5.65□□□□□ -1.5
SSX4O60224 RPSAP40-201ENST00000442343 891 ntBASIC5.65□□□□□ -1.5
SSX4O60224 RAB9AP2-201ENST00000443911 597 ntBASIC5.65□□□□□ -1.5
SSX4O60224 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC5.65□□□□□ -1.5
SSX4O60224 RPL26P30-201ENST00000453533 435 ntBASIC5.65□□□□□ -1.5
SSX4O60224 AL445687.2-201ENST00000458156 728 ntBASIC5.65□□□□□ -1.5
SSX4O60224 AL022319.1-201ENST00000458183 1167 ntBASIC5.65□□□□□ -1.5
SSX4O60224 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.65□□□□□ -1.5
SSX4O60224 AC114728.1-201ENST00000488289 483 ntBASIC5.65□□□□□ -1.5
SSX4O60224 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC5.65□□□□□ -1.5
SSX4O60224 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC5.65□□□□□ -1.5
SSX4O60224 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.65□□□□□ -1.5
SSX4O60224 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
SSX4O60224 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.65□□□□□ -1.5
SSX4O60224 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SSX4O60224 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.65□□□□□ -1.5
SSX4O60224 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.65□□□□□ -1.5
SSX4O60224 AC092718.4-201ENST00000566639 716 ntBASIC5.65□□□□□ -1.5
SSX4O60224 NDUFA5P11-201ENST00000567995 343 ntBASIC5.65□□□□□ -1.5
SSX4O60224 MIR4433B-201ENST00000581329 102 ntBASIC5.65□□□□□ -1.5
SSX4O60224 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC5.65□□□□□ -1.5
SSX4O60224 AL589765.6-201ENST00000601909 549 ntBASIC5.65□□□□□ -1.5
SSX4O60224 RPL12P48-201ENST00000605620 304 ntBASIC5.65□□□□□ -1.5
SSX4O60224 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.65□□□□□ -1.5
SSX4O60224 AC111152.1-202ENST00000635848 339 ntBASIC5.65□□□□□ -1.5
SSX4O60224 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SSX4O60224 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.51
SSX4O60224 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
SSX4O60224 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
SSX4O60224 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.65□□□□□ -1.51
SSX4O60224 KYNUP3-201ENST00000574386 1341 ntBASIC5.65□□□□□ -1.51
SSX4O60224 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC5.65□□□□□ -1.51
SSX4O60224 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SSX4O60224 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC5.65□□□□□ -1.51
SSX4O60224 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SSX4O60224 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SSX4O60224 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.64□□□□□ -1.51
SSX4O60224 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
SSX4O60224 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
SSX4O60224 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SSX4O60224 GUCY1B2-204ENST00000531898 1979 ntBASIC5.64□□□□□ -1.51
SSX4O60224 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SSX4O60224 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms