Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC5.68□□□□□ -1.5
FOXA1P55317 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
FOXA1P55317 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.67□□□□□ -1.5
FOXA1P55317 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 AP002833.3-201ENST00000625075 2265 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 SELENOWP1-201ENST00000322792 252 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 RN7SKP146-201ENST00000410242 334 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC5.67□□□□□ -1.5
FOXA1P55317 KIF4CP-201ENST00000422742 1279 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXA1P55317 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.67□□□□□ -1.5
FOXA1P55317 AC023245.1-201ENST00000468501 517 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 AL158068.1-201ENST00000506116 616 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXA1P55317 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC5.67□□□□□ -1.5
FOXA1P55317 MAST4-IT1-201ENST00000514241 658 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXA1P55317 OR4A42P-201ENST00000531397 938 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 AL121594.2-201ENST00000541658 472 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.67□□□□□ -1.5
FOXA1P55317 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXA1P55317 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.67□□□□□ -1.5
FOXA1P55317 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXA1P55317 AP005119.1-201ENST00000580956 292 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
FOXA1P55317 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXA1P55317 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.67□□□□□ -1.5
FOXA1P55317 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
FOXA1P55317 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
FOXA1P55317 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 AP004607.3-201ENST00000530354 3915 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 AC114774.1-201ENST00000507410 1770 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.67□□□□□ -1.5
FOXA1P55317 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 AC007998.4-201ENST00000612496 2533 ntBASIC5.67□□□□□ -1.5
FOXA1P55317 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXA1P55317 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 RBPJP7-201ENST00000442803 1447 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 RBPJP5-201ENST00000449433 1447 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.66□□□□□ -1.5
FOXA1P55317 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
FOXA1P55317 AL049634.1-201ENST00000453770 1720 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 RNA5SP279-201ENST00000365513 117 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 RN7SKP279-201ENST00000411383 298 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 RPS14P4-201ENST00000415880 418 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 AL354868.1-201ENST00000417077 482 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXA1P55317 Z82198.3-201ENST00000421145 199 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXA1P55317 AL356121.1-201ENST00000442911 156 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 BMS1P10-201ENST00000443754 1120 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC5.66□□□□□ -1.5
FOXA1P55317 HNRNPDLP2-201ENST00000455248 751 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXA1P55317 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 AC112484.3-201ENST00000505910 329 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXA1P55317 SNORA81.2-201ENST00000516868 170 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.66□□□□□ -1.5
FOXA1P55317 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
FOXA1P55317 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXA1P55317 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.66□□□□□ -1.5
FOXA1P55317 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC5.66□□□□□ -1.5
FOXA1P55317 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.66□□□□□ -1.5
FOXA1P55317 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXA1P55317 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
FOXA1P55317 OR1E3-201ENST00000575608 948 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXA1P55317 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC5.66□□□□□ -1.5
FOXA1P55317 AC073389.3-201ENST00000609434 935 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 AC092681.3-201ENST00000609463 678 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.66□□□□□ -1.5
FOXA1P55317 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
FOXA1P55317 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
FOXA1P55317 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
FOXA1P55317 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
FOXA1P55317 AC012254.3-201ENST00000591183 2117 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
FOXA1P55317 AL354854.1-201ENST00000455940 1363 ntBASIC5.66□□□□□ -1.5
FOXA1P55317 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms