Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LAPTM4BP2-201ENST00000604542 446 ntBASIC8.32□□□□□ -1.08
MSH6P52701 AC022919.1-201ENST00000624979 626 ntBASIC8.32□□□□□ -1.08
MSH6P52701 MFSD4BP1-201ENST00000513330 1552 ntBASIC8.32□□□□□ -1.08
MSH6P52701 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSH6P52701 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSH6P52701 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH6P52701 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC8.31□□□□□ -1.08
MSH6P52701 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH6P52701 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH6P52701 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH6P52701 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH6P52701 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH6P52701 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
MSH6P52701 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC8.31□□□□□ -1.08
MSH6P52701 AL645733.1-201ENST00000402250 217 ntBASIC8.31□□□□□ -1.08
MSH6P52701 NMD3P2-201ENST00000421815 761 ntBASIC8.31□□□□□ -1.08
MSH6P52701 AL445928.1-201ENST00000435545 222 ntBASIC8.31□□□□□ -1.08
MSH6P52701 AC005297.1-201ENST00000444765 862 ntBASIC8.31□□□□□ -1.08
MSH6P52701 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC8.31□□□□□ -1.08
MSH6P52701 RN7SL222P-201ENST00000476452 299 ntBASIC8.31□□□□□ -1.08
MSH6P52701 AC079841.1-201ENST00000481228 950 ntBASIC8.31□□□□□ -1.08
MSH6P52701 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC8.31□□□□□ -1.08
MSH6P52701 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC8.31□□□□□ -1.08
MSH6P52701 NRBF2P4-201ENST00000520874 850 ntBASIC8.31□□□□□ -1.08
MSH6P52701 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC8.31□□□□□ -1.08
MSH6P52701 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC8.31□□□□□ -1.08
MSH6P52701 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC8.31□□□□□ -1.08
MSH6P52701 SUGT1P3-202ENST00000604259 383 ntBASIC8.31□□□□□ -1.08
MSH6P52701 AC020765.1-201ENST00000604296 328 ntBASIC8.31□□□□□ -1.08
MSH6P52701 AC139493.1-201ENST00000604368 397 ntBASIC8.31□□□□□ -1.08
MSH6P52701 AP001784.1-201ENST00000624107 428 ntBASIC8.31□□□□□ -1.08
MSH6P52701 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
MSH6P52701 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC8.31□□□□□ -1.08
MSH6P52701 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC8.31□□□□□ -1.08
MSH6P52701 AL049634.1-201ENST00000453770 1720 ntBASIC8.31□□□□□ -1.08
MSH6P52701 ALB-209ENST00000503124 1741 ntTSL 5 BASIC8.31□□□□□ -1.08
MSH6P52701 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC8.31□□□□□ -1.08
MSH6P52701 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
MSH6P52701 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH6P52701 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH6P52701 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH6P52701 AC018765.1-201ENST00000623357 3446 ntBASIC8.31□□□□□ -1.08
MSH6P52701 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSH6P52701 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC8.3□□□□□ -1.08
MSH6P52701 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC8.3□□□□□ -1.08
MSH6P52701 RAD17P2-201ENST00000451754 1977 ntBASIC8.3□□□□□ -1.08
MSH6P52701 FTO-215ENST00000636491 1676 ntTSL 5 BASIC8.3□□□□□ -1.08
MSH6P52701 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC8.3□□□□□ -1.08
MSH6P52701 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
MSH6P52701 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSH6P52701 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
MSH6P52701 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC8.3□□□□□ -1.08
MSH6P52701 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC8.3□□□□□ -1.08
MSH6P52701 AURKAPS1-201ENST00000451805 1212 ntBASIC8.3□□□□□ -1.08
MSH6P52701 RPL7P39-201ENST00000481157 744 ntBASIC8.3□□□□□ -1.08
MSH6P52701 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC8.3□□□□□ -1.08
MSH6P52701 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSH6P52701 CLMN-206ENST00000556441 452 ntTSL 5 BASIC8.3□□□□□ -1.08
MSH6P52701 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC8.3□□□□□ -1.08
MSH6P52701 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC8.3□□□□□ -1.08
MSH6P52701 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSH6P52701 AFP-201ENST00000226359 1914 ntTSL 5 BASIC8.3□□□□□ -1.08
MSH6P52701 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC8.3□□□□□ -1.08
MSH6P52701 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSH6P52701 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC8.29□□□□□ -1.08
MSH6P52701 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
MSH6P52701 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSH6P52701 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
MSH6P52701 RNA5SP183-201ENST00000362452 119 ntBASIC8.29□□□□□ -1.08
MSH6P52701 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC8.29□□□□□ -1.08
MSH6P52701 AL139128.1-201ENST00000413921 941 ntBASIC8.29□□□□□ -1.08
MSH6P52701 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC8.29□□□□□ -1.08
MSH6P52701 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC8.29□□□□□ -1.08
MSH6P52701 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC8.29□□□□□ -1.08
MSH6P52701 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC8.29□□□□□ -1.08
MSH6P52701 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC8.29□□□□□ -1.08
MSH6P52701 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC8.29□□□□□ -1.08
MSH6P52701 RPL7P61-201ENST00000451721 751 ntBASIC8.29□□□□□ -1.08
MSH6P52701 RANP1-206ENST00000455094 651 ntBASIC8.29□□□□□ -1.08
MSH6P52701 EIF1P7-201ENST00000487533 337 ntBASIC8.29□□□□□ -1.08
MSH6P52701 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC8.29□□□□□ -1.08
MSH6P52701 RN7SKP66-201ENST00000516681 231 ntBASIC8.29□□□□□ -1.08
MSH6P52701 AC084337.1-201ENST00000524809 686 ntBASIC8.29□□□□□ -1.08
MSH6P52701 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC8.29□□□□□ -1.08
MSH6P52701 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC8.29□□□□□ -1.08
MSH6P52701 AC015720.2-201ENST00000567709 334 ntBASIC8.29□□□□□ -1.08
MSH6P52701 MIR5095-201ENST00000578844 88 ntBASIC8.29□□□□□ -1.08
MSH6P52701 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC8.29□□□□□ -1.08
MSH6P52701 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSH6P52701 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSH6P52701 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSH6P52701 AL031651.1-201ENST00000615357 1438 ntBASIC8.29□□□□□ -1.08
MSH6P52701 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
MSH6P52701 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
MSH6P52701 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSH6P52701 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSH6P52701 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSH6P52701 DPY19L2P2-203ENST00000435536 1858 ntBASIC8.29□□□□□ -1.08
MSH6P52701 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC8.28□□□□□ -1.08
MSH6P52701 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms