Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC132068.1-201ENST00000623805 459 ntBASIC7.24□□□□□ -1.25
COL5A3P25940 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
COL5A3P25940 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
COL5A3P25940 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
COL5A3P25940 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
COL5A3P25940 AC006213.6-201ENST00000623722 4179 ntBASIC7.24□□□□□ -1.25
COL5A3P25940 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
COL5A3P25940 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC7.24□□□□□ -1.25
COL5A3P25940 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
COL5A3P25940 AC112243.1-201ENST00000623949 3851 ntBASIC7.24□□□□□ -1.25
COL5A3P25940 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
COL5A3P25940 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
COL5A3P25940 AL133270.1-201ENST00000402635 279 ntBASIC7.24□□□□□ -1.25
COL5A3P25940 RMRPP5-201ENST00000411156 267 ntBASIC7.24□□□□□ -1.25
COL5A3P25940 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC7.24□□□□□ -1.25
COL5A3P25940 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC7.24□□□□□ -1.25
COL5A3P25940 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC7.24□□□□□ -1.25
COL5A3P25940 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
COL5A3P25940 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL5A3P25940 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 TLN2-211ENST00000636159 7441 ntTSL 5 BASIC7.23□□□□□ -1.25
COL5A3P25940 ATF7-202ENST00000456903 5218 ntAPPRIS P2 TSL 5 BASIC7.23□□□□□ -1.25
COL5A3P25940 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
COL5A3P25940 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC7.23□□□□□ -1.25
COL5A3P25940 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC7.23□□□□□ -1.25
COL5A3P25940 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 AC009804.1-201ENST00000400949 179 ntBASIC7.23□□□□□ -1.25
COL5A3P25940 SLC35E1P1-201ENST00000419313 864 ntBASIC7.23□□□□□ -1.25
COL5A3P25940 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC7.23□□□□□ -1.25
COL5A3P25940 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC7.23□□□□□ -1.25
COL5A3P25940 RPL7P6-201ENST00000480903 738 ntBASIC7.23□□□□□ -1.25
COL5A3P25940 AC015864.1-201ENST00000496512 544 ntBASIC7.23□□□□□ -1.25
COL5A3P25940 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC7.23□□□□□ -1.25
COL5A3P25940 AC139697.1-201ENST00000548429 745 ntBASIC7.23□□□□□ -1.25
COL5A3P25940 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC7.23□□□□□ -1.25
COL5A3P25940 AL445528.2-201ENST00000620582 470 ntBASIC7.23□□□□□ -1.25
COL5A3P25940 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7.23□□□□□ -1.25
COL5A3P25940 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
COL5A3P25940 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
COL5A3P25940 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC7.23□□□□□ -1.25
COL5A3P25940 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC7.23□□□□□ -1.25
COL5A3P25940 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL5A3P25940 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL5A3P25940 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL5A3P25940 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC7.22□□□□□ -1.25
COL5A3P25940 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL5A3P25940 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.22□□□□□ -1.25
COL5A3P25940 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC7.22□□□□□ -1.25
COL5A3P25940 RPL23P2-201ENST00000320371 421 ntBASIC7.22□□□□□ -1.25
COL5A3P25940 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL5A3P25940 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
COL5A3P25940 RPL7L1P9-201ENST00000431298 745 ntBASIC7.22□□□□□ -1.25
COL5A3P25940 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC7.22□□□□□ -1.25
COL5A3P25940 RPL15P21-201ENST00000495592 567 ntBASIC7.22□□□□□ -1.25
COL5A3P25940 RN7SL591P-201ENST00000496150 292 ntBASIC7.22□□□□□ -1.25
COL5A3P25940 AC090638.1-201ENST00000498296 909 ntBASIC7.22□□□□□ -1.25
COL5A3P25940 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC7.22□□□□□ -1.25
COL5A3P25940 AC090510.2-201ENST00000617465 629 ntBASIC7.22□□□□□ -1.25
COL5A3P25940 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
COL5A3P25940 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL5A3P25940 MRRFP1-201ENST00000435941 1675 ntBASIC7.22□□□□□ -1.25
COL5A3P25940 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC7.22□□□□□ -1.25
COL5A3P25940 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL5A3P25940 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC7.22□□□□□ -1.25
COL5A3P25940 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL5A3P25940 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL5A3P25940 POT1-202ENST00000393329 3950 ntTSL 5 BASIC7.21□□□□□ -1.25
COL5A3P25940 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC7.21□□□□□ -1.25
COL5A3P25940 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
COL5A3P25940 TMA16P2-201ENST00000413187 601 ntBASIC7.21□□□□□ -1.25
COL5A3P25940 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC7.21□□□□□ -1.25
COL5A3P25940 AC016027.5-201ENST00000427227 210 ntBASIC7.21□□□□□ -1.25
COL5A3P25940 AC073850.1-201ENST00000449243 255 ntBASIC7.21□□□□□ -1.25
COL5A3P25940 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC7.21□□□□□ -1.25
COL5A3P25940 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC7.21□□□□□ -1.25
COL5A3P25940 AC024451.1-201ENST00000508013 779 ntBASIC7.21□□□□□ -1.25
COL5A3P25940 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.25
COL5A3P25940 TPM3P3-201ENST00000521343 354 ntBASIC7.21□□□□□ -1.25
COL5A3P25940 AC022832.1-201ENST00000530718 645 ntBASIC7.21□□□□□ -1.25
COL5A3P25940 AL049779.2-201ENST00000553847 315 ntBASIC7.21□□□□□ -1.25
COL5A3P25940 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC7.21□□□□□ -1.25
COL5A3P25940 MIR3691-201ENST00000578066 90 ntBASIC7.21□□□□□ -1.25
COL5A3P25940 LINC01739-205ENST00000641890 573 ntBASIC7.21□□□□□ -1.25
COL5A3P25940 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC7.21□□□□□ -1.25
COL5A3P25940 EXOC5-211ENST00000621441 10589 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL5A3P25940 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.25
COL5A3P25940 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms