Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 KPNB1-201ENST00000290158 6139 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AC034205.1-201ENST00000520621 638 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AC010327.2-201ENST00000587647 488 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AL513548.2-201ENST00000602994 1207 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 PHACTR1-205ENST00000379350 4784 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 SYNJ2-207ENST00000638626 7332 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 S1PR3-202ENST00000375846 8505 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AL139415.1-201ENST00000424862 352 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 PCNPP1-201ENST00000552501 511 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 COL4A6-210ENST00000621266 6627 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 DPY19L1P1-201ENST00000417811 2594 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 TOGARAM1-201ENST00000361462 6375 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 RNA5SP479-201ENST00000364858 117 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 RNU11-6P-201ENST00000391127 133 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 COX6B1P1-201ENST00000415962 213 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 RNA5SP400-201ENST00000517155 111 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AL139099.4-201ENST00000614802 114 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AC012414.7-202ENST00000622705 1090 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AC132825.1-201ENST00000463573 2247 ntBASIC5.61□□□□□ -1.51
VPS13AQ96RL7 AKAP12-202ENST00000354675 6287 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 SORBS1-211ENST00000371247 7354 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 SEMA6D-206ENST00000389428 5874 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 OR10R3P-201ENST00000361688 942 ntBASIC5.6□□□□□ -1.51
VPS13AQ96RL7 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 ATP5A1P7-201ENST00000453978 1279 ntBASIC5.6□□□□□ -1.51
VPS13AQ96RL7 AC078899.1-201ENST00000521432 1185 ntBASIC5.6□□□□□ -1.51
VPS13AQ96RL7 CYCSP29-201ENST00000533731 318 ntBASIC5.6□□□□□ -1.51
VPS13AQ96RL7 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 AC127381.1-201ENST00000555979 939 ntBASIC5.6□□□□□ -1.51
VPS13AQ96RL7 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 UGT2B25P-201ENST00000511504 1586 ntBASIC5.6□□□□□ -1.51
VPS13AQ96RL7 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 PDE6A-201ENST00000255266 5642 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 AC011504.1-201ENST00000623331 4103 ntBASIC5.6□□□□□ -1.51
VPS13AQ96RL7 IRF5P1-201ENST00000504852 2164 ntBASIC5.6□□□□□ -1.51
VPS13AQ96RL7 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 TDGF1P1-201ENST00000445734 527 ntBASIC5.6□□□□□ -1.51
VPS13AQ96RL7 NDUFA12P1-201ENST00000455914 406 ntBASIC5.6□□□□□ -1.51
VPS13AQ96RL7 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 ARHGEF7-203ENST00000375723 4957 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 PPP1R3B-201ENST00000310455 5548 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS13AQ96RL7 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms