Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.85□□□□□ -1.47
PKNOX1P55347 RPL12P12-201ENST00000424633 501 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 ARMC4P1-201ENST00000438905 707 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 AC234771.2-201ENST00000445718 597 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 REG1CP-206ENST00000447469 496 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.85□□□□□ -1.47
PKNOX1P55347 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.85□□□□□ -1.47
PKNOX1P55347 AC017007.3-201ENST00000479865 435 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 RN7SKP288-201ENST00000516227 268 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
PKNOX1P55347 IGHVIII-11-1-201ENST00000522733 267 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.85□□□□□ -1.47
PKNOX1P55347 AC036111.2-201ENST00000533247 901 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
PKNOX1P55347 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.85□□□□□ -1.47
PKNOX1P55347 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.85□□□□□ -1.47
PKNOX1P55347 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
PKNOX1P55347 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.85□□□□□ -1.47
PKNOX1P55347 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC5.85□□□□□ -1.47
PKNOX1P55347 AC125494.2-201ENST00000602431 657 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC5.85□□□□□ -1.47
PKNOX1P55347 AC096861.1-201ENST00000616652 240 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.85□□□□□ -1.47
PKNOX1P55347 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
PKNOX1P55347 AC109446.4-201ENST00000623235 2755 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PKNOX1P55347 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PKNOX1P55347 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.85□□□□□ -1.47
PKNOX1P55347 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PKNOX1P55347 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PKNOX1P55347 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
PKNOX1P55347 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.85□□□□□ -1.47
PKNOX1P55347 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.85□□□□□ -1.47
PKNOX1P55347 AL137141.1-201ENST00000624622 4836 ntBASIC5.85□□□□□ -1.47
PKNOX1P55347 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.84□□□□□ -1.47
PKNOX1P55347 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.84□□□□□ -1.47
PKNOX1P55347 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
PKNOX1P55347 SAMM50P1-201ENST00000455403 1399 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.84□□□□□ -1.47
PKNOX1P55347 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.84□□□□□ -1.47
PKNOX1P55347 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
PKNOX1P55347 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.84□□□□□ -1.47
PKNOX1P55347 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
PKNOX1P55347 AC130304.1-201ENST00000622942 2385 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 OR10R3P-201ENST00000361688 942 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
PKNOX1P55347 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
PKNOX1P55347 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 AL133260.1-201ENST00000405720 405 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 RPL35AP31-201ENST00000418340 337 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC5.84□□□□□ -1.47
PKNOX1P55347 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
PKNOX1P55347 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.84□□□□□ -1.47
PKNOX1P55347 AL590004.3-202ENST00000445883 451 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 SDC4P-201ENST00000453285 601 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.84□□□□□ -1.47
PKNOX1P55347 Z83838.1-202ENST00000456225 839 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 CR383656.1-201ENST00000484916 377 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 AC083795.1-201ENST00000491760 320 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.84□□□□□ -1.47
PKNOX1P55347 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.84□□□□□ -1.47
PKNOX1P55347 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 NPM1P5-201ENST00000557228 838 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 AC007346.2-201ENST00000564816 892 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.84□□□□□ -1.47
PKNOX1P55347 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC5.84□□□□□ -1.47
PKNOX1P55347 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.84□□□□□ -1.47
PKNOX1P55347 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC5.84□□□□□ -1.47
PKNOX1P55347 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 AC011891.2-201ENST00000604949 397 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
PKNOX1P55347 AL109924.4-201ENST00000623089 670 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 SNX18P12-201ENST00000624821 759 ntBASIC5.84□□□□□ -1.47
PKNOX1P55347 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.84□□□□□ -1.47
PKNOX1P55347 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
PKNOX1P55347 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
PKNOX1P55347 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
PKNOX1P55347 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
PKNOX1P55347 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
PKNOX1P55347 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.84□□□□□ -1.48
PKNOX1P55347 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
PKNOX1P55347 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
PKNOX1P55347 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.83□□□□□ -1.48
PKNOX1P55347 AL121839.2-201ENST00000565058 6943 ntBASIC5.83□□□□□ -1.48
PKNOX1P55347 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
PKNOX1P55347 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
PKNOX1P55347 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
PKNOX1P55347 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
PKNOX1P55347 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
PKNOX1P55347 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
PKNOX1P55347 NLRP3P1-201ENST00000622303 1785 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms